Strain Fitness in Pseudomonas putida KT2440 around PP_0288

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0287 and PP_0288 are separated by 268 nucleotidesPP_0288 and PP_0289 are separated by 179 nucleotidesPP_0289 and PP_0290 are separated by 0 nucleotides PP_0287: PP_0287 - conserved exported protein of unknown function, at 345,599 to 347,845 _0287 PP_0288: PP_0288 - putative Oxalate/formate antiporter, at 348,114 to 349,775 _0288 PP_0289: PP_0289 - Imidazoleglycerol-phosphate dehydratase, at 349,955 to 350,587 _0289 PP_0290: PP_0290 - Imidazole glycerol phosphate synthase subunit HisH, at 350,588 to 351,226 _0290 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 347.121 kb on + strand, within PP_0287at 347.121 kb on + strand, within PP_0287at 347.122 kb on - strand, within PP_0287at 347.201 kb on - strand, within PP_0287at 347.277 kb on + strand, within PP_0287at 347.277 kb on + strand, within PP_0287at 347.277 kb on + strand, within PP_0287at 347.277 kb on + strand, within PP_0287at 347.278 kb on - strand, within PP_0287at 347.278 kb on - strand, within PP_0287at 347.278 kb on - strand, within PP_0287at 347.305 kb on - strand, within PP_0287at 347.519 kb on + strand, within PP_0287at 347.519 kb on + strand, within PP_0287at 347.520 kb on - strand, within PP_0287at 347.520 kb on - strand, within PP_0287at 347.520 kb on - strand, within PP_0287at 347.743 kb on - strandat 347.860 kb on - strandat 347.888 kb on + strandat 347.889 kb on - strandat 347.889 kb on - strandat 347.889 kb on - strandat 347.890 kb on + strandat 347.890 kb on + strandat 347.891 kb on - strandat 347.891 kb on - strandat 347.891 kb on - strandat 347.917 kb on + strandat 347.918 kb on - strandat 347.918 kb on - strandat 347.924 kb on - strandat 347.931 kb on + strandat 347.932 kb on - strandat 347.932 kb on - strandat 347.943 kb on - strandat 347.950 kb on + strandat 347.961 kb on - strandat 347.961 kb on - strandat 347.961 kb on - strandat 347.977 kb on + strandat 347.977 kb on + strandat 347.977 kb on + strandat 347.977 kb on + strandat 347.977 kb on + strandat 347.977 kb on + strandat 347.978 kb on - strandat 347.978 kb on - strandat 347.980 kb on + strandat 347.980 kb on + strandat 347.981 kb on - strandat 348.021 kb on - strandat 348.096 kb on - strandat 348.096 kb on - strandat 348.096 kb on - strandat 348.179 kb on - strandat 348.256 kb on - strandat 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.396 kb on + strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.397 kb on - strand, within PP_0288at 348.398 kb on + strand, within PP_0288at 348.526 kb on + strand, within PP_0288at 348.527 kb on - strand, within PP_0288at 348.603 kb on + strand, within PP_0288at 348.603 kb on + strand, within PP_0288at 348.603 kb on + strand, within PP_0288at 348.604 kb on - strand, within PP_0288at 348.725 kb on + strand, within PP_0288at 348.793 kb on - strand, within PP_0288at 348.833 kb on - strand, within PP_0288at 348.953 kb on + strand, within PP_0288at 348.954 kb on - strand, within PP_0288at 349.046 kb on - strand, within PP_0288at 349.182 kb on + strand, within PP_0288at 349.183 kb on - strand, within PP_0288at 349.183 kb on - strand, within PP_0288at 349.183 kb on - strand, within PP_0288at 349.203 kb on + strand, within PP_0288at 349.203 kb on + strand, within PP_0288at 349.204 kb on - strand, within PP_0288at 349.204 kb on - strand, within PP_0288at 349.204 kb on - strand, within PP_0288at 349.204 kb on - strand, within PP_0288at 349.236 kb on + strand, within PP_0288at 349.236 kb on + strand, within PP_0288at 349.236 kb on + strand, within PP_0288at 349.236 kb on + strand, within PP_0288at 349.236 kb on + strand, within PP_0288at 349.236 kb on + strand, within PP_0288at 349.236 kb on + strand, within PP_0288at 349.237 kb on - strand, within PP_0288at 349.237 kb on - strand, within PP_0288at 349.237 kb on - strand, within PP_0288at 349.237 kb on - strand, within PP_0288at 349.306 kb on + strand, within PP_0288at 349.306 kb on + strand, within PP_0288at 349.306 kb on + strand, within PP_0288at 349.314 kb on + strand, within PP_0288at 349.314 kb on + strand, within PP_0288at 349.314 kb on + strand, within PP_0288at 349.314 kb on + strand, within PP_0288at 349.315 kb on - strand, within PP_0288at 349.315 kb on - strand, within PP_0288at 349.446 kb on + strand, within PP_0288at 349.447 kb on - strand, within PP_0288at 349.458 kb on + strand, within PP_0288at 349.494 kb on + strand, within PP_0288at 349.495 kb on - strand, within PP_0288at 349.495 kb on - strand, within PP_0288at 349.509 kb on + strand, within PP_0288at 349.509 kb on + strand, within PP_0288at 349.509 kb on + strand, within PP_0288at 349.509 kb on + strand, within PP_0288at 349.509 kb on + strand, within PP_0288at 349.509 kb on + strand, within PP_0288at 349.510 kb on - strand, within PP_0288at 349.510 kb on - strand, within PP_0288at 349.510 kb on - strand, within PP_0288at 349.542 kb on - strand, within PP_0288at 349.542 kb on - strand, within PP_0288at 349.779 kb on - strandat 349.779 kb on - strandat 349.779 kb on - strandat 349.857 kb on + strandat 349.867 kb on + strandat 349.867 kb on + strandat 349.867 kb on + strandat 349.868 kb on - strandat 349.868 kb on - strandat 349.914 kb on + strandat 349.914 kb on + strandat 349.914 kb on + strandat 349.914 kb on + strandat 349.951 kb on + strandat 349.951 kb on + strandat 349.951 kb on + strandat 349.952 kb on - strandat 349.953 kb on + strandat 349.953 kb on + strandat 349.954 kb on - strandat 350.005 kb on + strandat 350.005 kb on + strandat 350.006 kb on - strandat 350.006 kb on - strandat 350.090 kb on - strand, within PP_0289at 350.174 kb on - strand, within PP_0289at 350.174 kb on - strand, within PP_0289at 350.174 kb on - strand, within PP_0289at 350.260 kb on + strand, within PP_0289at 350.260 kb on + strand, within PP_0289at 350.271 kb on - strand, within PP_0289at 350.282 kb on + strand, within PP_0289at 350.282 kb on + strand, within PP_0289at 350.282 kb on + strand, within PP_0289at 350.283 kb on - strand, within PP_0289at 350.355 kb on + strand, within PP_0289at 350.356 kb on - strand, within PP_0289at 350.356 kb on - strand, within PP_0289at 350.356 kb on - strand, within PP_0289at 350.360 kb on + strand, within PP_0289at 350.360 kb on + strand, within PP_0289at 350.361 kb on - strand, within PP_0289at 350.361 kb on - strand, within PP_0289at 350.361 kb on - strand, within PP_0289at 350.361 kb on - strand, within PP_0289at 350.449 kb on + strand, within PP_0289at 350.449 kb on + strand, within PP_0289at 350.548 kb on + strandat 350.548 kb on + strandat 350.548 kb on + strandat 350.549 kb on - strandat 350.585 kb on + strandat 350.612 kb on + strandat 350.658 kb on + strand, within PP_0290at 350.658 kb on + strand, within PP_0290at 350.659 kb on - strand, within PP_0290at 350.659 kb on - strand, within PP_0290at 350.668 kb on + strand, within PP_0290at 350.680 kb on + strand, within PP_0290

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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347,121 + PP_0287 0.68 -0.3
347,121 + PP_0287 0.68 -0.2
347,122 - PP_0287 0.68 -1.8
347,201 - PP_0287 0.71 -2.2
347,277 + PP_0287 0.75 -0.2
347,277 + PP_0287 0.75 +0.2
347,277 + PP_0287 0.75 -1.4
347,277 + PP_0287 0.75 -0.9
347,278 - PP_0287 0.75 +0.6
347,278 - PP_0287 0.75 +0.3
347,278 - PP_0287 0.75 -0.3
347,305 - PP_0287 0.76 +0.0
347,519 + PP_0287 0.85 +0.0
347,519 + PP_0287 0.85 +0.7
347,520 - PP_0287 0.85 -0.1
347,520 - PP_0287 0.85 -1.3
347,520 - PP_0287 0.85 -0.3
347,743 - +0.1
347,860 - +0.1
347,888 + +0.2
347,889 - +0.4
347,889 - +0.8
347,889 - +0.3
347,890 + +0.1
347,890 + -0.1
347,891 - +0.1
347,891 - -0.5
347,891 - -2.8
347,917 + +0.3
347,918 - +0.2
347,918 - -1.2
347,924 - +0.8
347,931 + +0.5
347,932 - -0.5
347,932 - +1.1
347,943 - -0.6
347,950 + +0.4
347,961 - -0.3
347,961 - -0.3
347,961 - +0.6
347,977 + +0.3
347,977 + +0.9
347,977 + -0.9
347,977 + +0.7
347,977 + +1.3
347,977 + +0.2
347,978 - +0.3
347,978 - +0.8
347,980 + +0.2
347,980 + -0.4
347,981 - -0.4
348,021 - +0.5
348,096 - +2.1
348,096 - -2.3
348,096 - +0.3
348,179 - +0.1
348,256 - +0.6
348,396 + PP_0288 0.17 +0.9
348,396 + PP_0288 0.17 -1.1
348,396 + PP_0288 0.17 -1.5
348,396 + PP_0288 0.17 -1.0
348,396 + PP_0288 0.17 -1.4
348,396 + PP_0288 0.17 -0.3
348,396 + PP_0288 0.17 +0.0
348,396 + PP_0288 0.17 +1.0
348,397 - PP_0288 0.17 -0.4
348,397 - PP_0288 0.17 -0.4
348,397 - PP_0288 0.17 +0.0
348,397 - PP_0288 0.17 -0.8
348,397 - PP_0288 0.17 +0.7
348,397 - PP_0288 0.17 -0.7
348,397 - PP_0288 0.17 -0.8
348,398 + PP_0288 0.17 -0.2
348,526 + PP_0288 0.25 -0.5
348,527 - PP_0288 0.25 -0.5
348,603 + PP_0288 0.29 -0.1
348,603 + PP_0288 0.29 +0.3
348,603 + PP_0288 0.29 -1.5
348,604 - PP_0288 0.29 -1.4
348,725 + PP_0288 0.37 -2.1
348,793 - PP_0288 0.41 +0.6
348,833 - PP_0288 0.43 -0.9
348,953 + PP_0288 0.50 -1.1
348,954 - PP_0288 0.51 +0.2
349,046 - PP_0288 0.56 +0.3
349,182 + PP_0288 0.64 -0.4
349,183 - PP_0288 0.64 -0.1
349,183 - PP_0288 0.64 -0.5
349,183 - PP_0288 0.64 +0.4
349,203 + PP_0288 0.66 -1.2
349,203 + PP_0288 0.66 -0.8
349,204 - PP_0288 0.66 -0.7
349,204 - PP_0288 0.66 -0.1
349,204 - PP_0288 0.66 -0.5
349,204 - PP_0288 0.66 -0.8
349,236 + PP_0288 0.68 +0.3
349,236 + PP_0288 0.68 -0.2
349,236 + PP_0288 0.68 -0.0
349,236 + PP_0288 0.68 -1.0
349,236 + PP_0288 0.68 -1.2
349,236 + PP_0288 0.68 +0.7
349,236 + PP_0288 0.68 -1.3
349,237 - PP_0288 0.68 -0.4
349,237 - PP_0288 0.68 +1.0
349,237 - PP_0288 0.68 -1.3
349,237 - PP_0288 0.68 -1.0
349,306 + PP_0288 0.72 -0.1
349,306 + PP_0288 0.72 -0.1
349,306 + PP_0288 0.72 -2.8
349,314 + PP_0288 0.72 -0.7
349,314 + PP_0288 0.72 -0.3
349,314 + PP_0288 0.72 -0.3
349,314 + PP_0288 0.72 +0.2
349,315 - PP_0288 0.72 -0.3
349,315 - PP_0288 0.72 -2.1
349,446 + PP_0288 0.80 -1.0
349,447 - PP_0288 0.80 -0.4
349,458 + PP_0288 0.81 -0.4
349,494 + PP_0288 0.83 -1.1
349,495 - PP_0288 0.83 +0.2
349,495 - PP_0288 0.83 +0.2
349,509 + PP_0288 0.84 -2.1
349,509 + PP_0288 0.84 -0.1
349,509 + PP_0288 0.84 -0.5
349,509 + PP_0288 0.84 -2.8
349,509 + PP_0288 0.84 +0.1
349,509 + PP_0288 0.84 -0.3
349,510 - PP_0288 0.84 +0.5
349,510 - PP_0288 0.84 +0.3
349,510 - PP_0288 0.84 -0.6
349,542 - PP_0288 0.86 -0.9
349,542 - PP_0288 0.86 +0.1
349,779 - +0.0
349,779 - -1.3
349,779 - +0.4
349,857 + +0.6
349,867 + +0.1
349,867 + +0.2
349,867 + -0.3
349,868 - -0.2
349,868 - +0.2
349,914 + -0.3
349,914 + +0.0
349,914 + -0.4
349,914 + -0.4
349,951 + -0.4
349,951 + -0.5
349,951 + +0.0
349,952 - -0.4
349,953 + -0.2
349,953 + -0.2
349,954 - -0.1
350,005 + +0.3
350,005 + -0.7
350,006 - -0.5
350,006 - -1.3
350,090 - PP_0289 0.21 +1.4
350,174 - PP_0289 0.35 -1.5
350,174 - PP_0289 0.35 -0.2
350,174 - PP_0289 0.35 -0.4
350,260 + PP_0289 0.48 -0.7
350,260 + PP_0289 0.48 -1.7
350,271 - PP_0289 0.50 +0.3
350,282 + PP_0289 0.52 -0.3
350,282 + PP_0289 0.52 +0.3
350,282 + PP_0289 0.52 +0.6
350,283 - PP_0289 0.52 -0.7
350,355 + PP_0289 0.63 -0.4
350,356 - PP_0289 0.63 -0.4
350,356 - PP_0289 0.63 -0.6
350,356 - PP_0289 0.63 -1.9
350,360 + PP_0289 0.64 -0.2
350,360 + PP_0289 0.64 +0.3
350,361 - PP_0289 0.64 -0.3
350,361 - PP_0289 0.64 +0.3
350,361 - PP_0289 0.64 -0.2
350,361 - PP_0289 0.64 +1.1
350,449 + PP_0289 0.78 -2.8
350,449 + PP_0289 0.78 -2.5
350,548 + -0.2
350,548 + -1.5
350,548 + -0.2
350,549 - -0.7
350,585 + -1.3
350,612 + +0.1
350,658 + PP_0290 0.11 +0.2
350,658 + PP_0290 0.11 +1.1
350,659 - PP_0290 0.11 -1.2
350,659 - PP_0290 0.11 -1.4
350,668 + PP_0290 0.13 -0.5
350,680 + PP_0290 0.14 +0.6

Or see this region's nucleotide sequence