Strain Fitness in Pseudomonas putida KT2440 around PP_0077

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0076 and PP_0077 are separated by 14 nucleotidesPP_0077 and PP_0079 are separated by 108 nucleotides PP_0076: PP_0076 - putative choline betaine-binding protein, at 86,862 to 87,785 _0076 PP_0077: PP_0077 - choline-sulfatase, at 87,800 to 89,317 _0077 PP_0079: PP_0079 - putative transcriptional regulator, at 89,426 to 90,325 _0079 Position (kb) 87 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 86.863 kb on + strandat 86.864 kb on - strandat 86.864 kb on - strandat 86.998 kb on - strand, within PP_0076at 86.998 kb on - strand, within PP_0076at 86.998 kb on - strand, within PP_0076at 86.998 kb on - strand, within PP_0076at 86.998 kb on - strand, within PP_0076at 87.106 kb on + strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.107 kb on - strand, within PP_0076at 87.108 kb on + strand, within PP_0076at 87.109 kb on - strand, within PP_0076at 87.109 kb on - strand, within PP_0076at 87.109 kb on - strand, within PP_0076at 87.151 kb on + strand, within PP_0076at 87.151 kb on + strand, within PP_0076at 87.152 kb on - strand, within PP_0076at 87.427 kb on + strand, within PP_0076at 87.427 kb on + strand, within PP_0076at 87.427 kb on + strand, within PP_0076at 87.427 kb on + strand, within PP_0076at 87.428 kb on - strand, within PP_0076at 87.428 kb on - strand, within PP_0076at 87.428 kb on - strand, within PP_0076at 87.580 kb on + strand, within PP_0076at 87.580 kb on + strand, within PP_0076at 87.580 kb on + strand, within PP_0076at 87.581 kb on - strand, within PP_0076at 87.636 kb on + strand, within PP_0076at 87.669 kb on - strandat 87.669 kb on - strand, within PP_0076at 87.873 kb on + strandat 87.873 kb on + strandat 87.873 kb on + strandat 87.873 kb on + strandat 87.873 kb on + strandat 87.873 kb on + strandat 87.873 kb on + strandat 87.874 kb on - strandat 87.874 kb on - strandat 87.874 kb on - strandat 87.874 kb on - strandat 87.874 kb on - strandat 87.974 kb on + strand, within PP_0077at 87.974 kb on + strand, within PP_0077at 87.975 kb on - strand, within PP_0077at 88.101 kb on + strand, within PP_0077at 88.102 kb on - strand, within PP_0077at 88.102 kb on - strand, within PP_0077at 88.102 kb on - strand, within PP_0077at 88.102 kb on - strand, within PP_0077at 88.106 kb on + strand, within PP_0077at 88.106 kb on + strand, within PP_0077at 88.106 kb on + strand, within PP_0077at 88.107 kb on - strand, within PP_0077at 88.107 kb on - strand, within PP_0077at 88.129 kb on - strand, within PP_0077at 88.140 kb on + strand, within PP_0077at 88.140 kb on + strand, within PP_0077at 88.141 kb on - strand, within PP_0077at 88.189 kb on + strand, within PP_0077at 88.190 kb on - strand, within PP_0077at 88.191 kb on + strand, within PP_0077at 88.191 kb on + strand, within PP_0077at 88.191 kb on + strand, within PP_0077at 88.191 kb on + strand, within PP_0077at 88.191 kb on + strand, within PP_0077at 88.191 kb on + strand, within PP_0077at 88.192 kb on - strand, within PP_0077at 88.192 kb on - strand, within PP_0077at 88.192 kb on - strand, within PP_0077at 88.192 kb on - strand, within PP_0077at 88.416 kb on + strand, within PP_0077at 88.416 kb on + strand, within PP_0077at 88.533 kb on + strand, within PP_0077at 88.535 kb on - strand, within PP_0077at 88.536 kb on + strand, within PP_0077at 88.536 kb on + strand, within PP_0077at 88.536 kb on + strand, within PP_0077at 88.537 kb on - strand, within PP_0077at 88.537 kb on - strand, within PP_0077at 88.537 kb on - strand, within PP_0077at 88.537 kb on - strand, within PP_0077at 88.537 kb on - strand, within PP_0077at 88.554 kb on + strand, within PP_0077at 88.579 kb on + strand, within PP_0077at 88.611 kb on + strand, within PP_0077at 88.611 kb on + strand, within PP_0077at 88.611 kb on + strand, within PP_0077at 88.611 kb on + strand, within PP_0077at 88.695 kb on + strand, within PP_0077at 88.725 kb on + strand, within PP_0077at 88.725 kb on + strand, within PP_0077at 88.726 kb on - strand, within PP_0077at 88.726 kb on - strand, within PP_0077at 88.726 kb on - strand, within PP_0077at 88.797 kb on + strand, within PP_0077at 88.797 kb on + strand, within PP_0077at 88.804 kb on - strand, within PP_0077at 88.956 kb on + strand, within PP_0077at 89.058 kb on + strand, within PP_0077at 89.058 kb on + strand, within PP_0077at 89.059 kb on - strand, within PP_0077at 89.067 kb on + strand, within PP_0077at 89.067 kb on + strand, within PP_0077at 89.068 kb on - strand, within PP_0077at 89.106 kb on + strand, within PP_0077at 89.106 kb on + strand, within PP_0077at 89.253 kb on + strandat 89.302 kb on + strandat 89.358 kb on - strandat 89.377 kb on + strandat 89.377 kb on + strandat 89.377 kb on + strandat 89.377 kb on + strandat 89.377 kb on + strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.378 kb on - strandat 89.387 kb on - strandat 89.415 kb on + strandat 89.470 kb on - strandat 89.470 kb on - strandat 89.680 kb on + strand, within PP_0079at 89.789 kb on + strand, within PP_0079at 89.790 kb on - strand, within PP_0079at 90.103 kb on + strand, within PP_0079at 90.103 kb on + strand, within PP_0079at 90.103 kb on + strand, within PP_0079at 90.104 kb on - strand, within PP_0079at 90.104 kb on - strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.107 kb on + strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.108 kb on - strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.109 kb on + strand, within PP_0079at 90.110 kb on - strand, within PP_0079at 90.110 kb on - strand, within PP_0079at 90.239 kb on + strandat 90.239 kb on + strandat 90.239 kb on + strandat 90.240 kb on - strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.242 kb on + strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.243 kb on - strandat 90.246 kb on + strandat 90.246 kb on + strandat 90.247 kb on - strandat 90.252 kb on + strandat 90.252 kb on + strandat 90.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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86,863 + -1.0
86,864 - -0.1
86,864 - -0.3
86,998 - PP_0076 0.15 -1.0
86,998 - PP_0076 0.15 +0.1
86,998 - PP_0076 0.15 +0.8
86,998 - PP_0076 0.15 -2.0
86,998 - PP_0076 0.15 +0.3
87,106 + PP_0076 0.26 +1.0
87,107 - PP_0076 0.27 -0.5
87,107 - PP_0076 0.27 +0.8
87,107 - PP_0076 0.27 +0.6
87,107 - PP_0076 0.27 -1.9
87,107 - PP_0076 0.27 -1.9
87,107 - PP_0076 0.27 +0.2
87,107 - PP_0076 0.27 +1.0
87,107 - PP_0076 0.27 +0.0
87,108 + PP_0076 0.27 -2.6
87,109 - PP_0076 0.27 +0.3
87,109 - PP_0076 0.27 -1.1
87,109 - PP_0076 0.27 -0.8
87,151 + PP_0076 0.31 -0.5
87,151 + PP_0076 0.31 -0.2
87,152 - PP_0076 0.31 +0.2
87,427 + PP_0076 0.61 -1.4
87,427 + PP_0076 0.61 +0.5
87,427 + PP_0076 0.61 +1.2
87,427 + PP_0076 0.61 -1.0
87,428 - PP_0076 0.61 -0.9
87,428 - PP_0076 0.61 -1.3
87,428 - PP_0076 0.61 -0.0
87,580 + PP_0076 0.78 +0.4
87,580 + PP_0076 0.78 -0.0
87,580 + PP_0076 0.78 -0.0
87,581 - PP_0076 0.78 -1.5
87,636 + PP_0076 0.84 +0.3
87,669 - +1.8
87,669 - PP_0076 0.87 -0.1
87,873 + +0.2
87,873 + -1.2
87,873 + +0.9
87,873 + +0.3
87,873 + +0.3
87,873 + -0.1
87,873 + -2.3
87,874 - -0.4
87,874 - +0.5
87,874 - +0.1
87,874 - -0.3
87,874 - -1.1
87,974 + PP_0077 0.11 +0.1
87,974 + PP_0077 0.11 +0.7
87,975 - PP_0077 0.12 +0.1
88,101 + PP_0077 0.20 +0.4
88,102 - PP_0077 0.20 -0.1
88,102 - PP_0077 0.20 -0.0
88,102 - PP_0077 0.20 +0.5
88,102 - PP_0077 0.20 +0.6
88,106 + PP_0077 0.20 +0.6
88,106 + PP_0077 0.20 +0.7
88,106 + PP_0077 0.20 -0.1
88,107 - PP_0077 0.20 -0.6
88,107 - PP_0077 0.20 -1.3
88,129 - PP_0077 0.22 +0.3
88,140 + PP_0077 0.22 +1.0
88,140 + PP_0077 0.22 -0.6
88,141 - PP_0077 0.22 -1.3
88,189 + PP_0077 0.26 +1.2
88,190 - PP_0077 0.26 +0.2
88,191 + PP_0077 0.26 +0.2
88,191 + PP_0077 0.26 -0.4
88,191 + PP_0077 0.26 +0.5
88,191 + PP_0077 0.26 +0.7
88,191 + PP_0077 0.26 -2.4
88,191 + PP_0077 0.26 +1.3
88,192 - PP_0077 0.26 +0.7
88,192 - PP_0077 0.26 +1.6
88,192 - PP_0077 0.26 +1.0
88,192 - PP_0077 0.26 +0.9
88,416 + PP_0077 0.41 +0.9
88,416 + PP_0077 0.41 +0.1
88,533 + PP_0077 0.48 -0.0
88,535 - PP_0077 0.48 -0.0
88,536 + PP_0077 0.48 +0.4
88,536 + PP_0077 0.48 +0.2
88,536 + PP_0077 0.48 +0.6
88,537 - PP_0077 0.49 +0.3
88,537 - PP_0077 0.49 +0.1
88,537 - PP_0077 0.49 +0.1
88,537 - PP_0077 0.49 -0.3
88,537 - PP_0077 0.49 +1.6
88,554 + PP_0077 0.50 -0.5
88,579 + PP_0077 0.51 +0.7
88,611 + PP_0077 0.53 +0.4
88,611 + PP_0077 0.53 -2.5
88,611 + PP_0077 0.53 +0.9
88,611 + PP_0077 0.53 +0.3
88,695 + PP_0077 0.59 +0.0
88,725 + PP_0077 0.61 -0.5
88,725 + PP_0077 0.61 +1.0
88,726 - PP_0077 0.61 -2.3
88,726 - PP_0077 0.61 -0.6
88,726 - PP_0077 0.61 +0.2
88,797 + PP_0077 0.66 +0.5
88,797 + PP_0077 0.66 +0.2
88,804 - PP_0077 0.66 +0.6
88,956 + PP_0077 0.76 -0.2
89,058 + PP_0077 0.83 +2.0
89,058 + PP_0077 0.83 -0.5
89,059 - PP_0077 0.83 -0.1
89,067 + PP_0077 0.83 +0.3
89,067 + PP_0077 0.83 +1.0
89,068 - PP_0077 0.84 -1.7
89,106 + PP_0077 0.86 +0.3
89,106 + PP_0077 0.86 +0.4
89,253 + +0.2
89,302 + +0.7
89,358 - +1.9
89,377 + -0.5
89,377 + +0.1
89,377 + +0.9
89,377 + -0.4
89,377 + -2.9
89,378 - +1.6
89,378 - +0.1
89,378 - +0.2
89,378 - +0.4
89,378 - -1.7
89,378 - -1.8
89,378 - +0.0
89,387 - -0.3
89,415 + -0.4
89,470 - +0.5
89,470 - +1.2
89,680 + PP_0079 0.28 -0.1
89,789 + PP_0079 0.40 +0.7
89,790 - PP_0079 0.40 -0.4
90,103 + PP_0079 0.75 -0.6
90,103 + PP_0079 0.75 -0.0
90,103 + PP_0079 0.75 -0.5
90,104 - PP_0079 0.75 -0.0
90,104 - PP_0079 0.75 -1.1
90,107 + PP_0079 0.76 -0.7
90,107 + PP_0079 0.76 -0.8
90,107 + PP_0079 0.76 +0.1
90,107 + PP_0079 0.76 -0.8
90,108 - PP_0079 0.76 -0.2
90,108 - PP_0079 0.76 +0.5
90,108 - PP_0079 0.76 +1.1
90,108 - PP_0079 0.76 +0.7
90,108 - PP_0079 0.76 -0.2
90,108 - PP_0079 0.76 -0.4
90,109 + PP_0079 0.76 -1.8
90,109 + PP_0079 0.76 -1.0
90,109 + PP_0079 0.76 -0.2
90,109 + PP_0079 0.76 -2.2
90,109 + PP_0079 0.76 -0.7
90,110 - PP_0079 0.76 +0.0
90,110 - PP_0079 0.76 -1.5
90,239 + +0.8
90,239 + -0.2
90,239 + +0.2
90,240 - +0.5
90,242 + -1.2
90,242 + +0.4
90,242 + +0.4
90,242 + -0.8
90,242 + -1.1
90,242 + +0.8
90,242 + -1.1
90,243 - +0.0
90,243 - -0.8
90,243 - -0.3
90,243 - -0.6
90,243 - -0.5
90,246 + +0.5
90,246 + +1.5
90,247 - -1.0
90,252 + -0.3
90,252 + -1.1
90,253 - -0.4

Or see this region's nucleotide sequence