Strain Fitness in Pseudomonas putida KT2440 around PP_5692

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
5,073,186	+				-1.4
5,073,188	+				+0.3
5,073,188	+				+0.7
5,073,192	+				-0.3
5,073,293	-		PP_5690	0.16	+1.2
5,073,328	+		PP_5690	0.25	+0.6
5,073,336	-		PP_5690	0.27	+0.2
5,073,336	-		PP_5690	0.27	+0.8
5,073,464	-		PP_5690	0.60	-1.4
5,073,490	-		PP_5690	0.67	+0.9
5,073,502	+		PP_5690	0.70	+0.4
5,073,502	+		PP_5690	0.70	+0.5
5,073,506	+		PP_5690	0.71	-0.6
5,073,506	+		PP_5690	0.71	+0.4
5,073,506	+		PP_5690	0.71	-0.9
5,073,507	-		PP_5690	0.72	+0.3
5,073,507	-		PP_5690	0.72	-1.4
5,073,507	-		PP_5690	0.72	-0.4
5,073,601	+				-2.7
5,073,602	-				+0.4
5,073,737	+		PP_5691	0.14	+0.2
5,073,767	+		PP_5691	0.21	+0.6
5,073,767	+		PP_5691	0.21	-2.1
5,073,767	+		PP_5691	0.21	-2.6
5,073,767	+		PP_5691	0.21	-0.1
5,073,796	-		PP_5691	0.27	-0.4
5,073,837	+		PP_5691	0.36	-0.2
5,073,961	-		PP_5691	0.64	-0.9
5,074,008	-		PP_5691	0.74	+0.6
5,074,040	+		PP_5691	0.82	+1.0
5,074,040	+		PP_5691	0.82	-2.1
5,074,040	+		PP_5691	0.82	+0.8
5,074,040	+		PP_5691	0.82	-0.3
5,074,041	-		PP_5691	0.82	+0.8
5,074,041	-		PP_5691	0.82	-2.2
5,074,045	-		PP_5691	0.83	-0.1
5,074,045	-		PP_5691	0.83	+0.5
5,074,094	+				+0.1
5,074,113	-				+0.4
5,074,137	+				+0.7
5,074,138	-				-1.3
5,074,209	+				+0.5
5,074,209	+				-0.2
5,074,210	-				+0.6
5,074,236	-		PP_5692	0.17	+0.4
5,074,246	-		PP_5692	0.19	-1.8
5,074,281	+		PP_5692	0.28	+0.4
5,074,281	+		PP_5692	0.28	-1.5
5,074,281	+		PP_5692	0.28	-0.5
5,074,281	+		PP_5692	0.28	+0.8
5,074,282	-		PP_5692	0.28	-1.7
5,074,282	-		PP_5692	0.28	+0.3
5,074,282	-		PP_5692	0.28	-0.1
5,074,282	-		PP_5692	0.28	-0.8
5,074,282	-		PP_5692	0.28	+0.3
5,074,282	-		PP_5692	0.28	+0.7
5,074,282	-		PP_5692	0.28	+0.0
5,074,384	+		PP_5692	0.54	-2.8
5,074,385	-		PP_5692	0.54	-0.2
5,074,461	+		PP_5692	0.74	-1.0
5,074,461	+		PP_5692	0.74	-1.5
5,074,461	+		PP_5692	0.74	-0.1
5,074,462	-		PP_5692	0.74	-3.0
5,074,463	+		PP_5692	0.74	+0.2
5,074,464	-		PP_5692	0.75	+0.3
5,074,464	-		PP_5692	0.75	-1.2
5,074,464	-		PP_5692	0.75	-1.3
5,074,464	-		PP_5692	0.75	+0.3
5,074,492	-		PP_5692	0.82	-1.2
5,074,502	-		PP_5692	0.84	-0.3
5,074,615	+				-0.3
5,074,616	-				-0.9
5,074,630	-				-0.4
5,074,630	-				-0.2
5,074,721	+				-0.8
5,074,721	+				-0.6
5,074,721	+				+0.4
5,074,722	-				-0.0
5,074,722	-				-1.3
5,074,722	-				+0.9
5,074,722	-				-1.7
5,074,722	-				+0.1
5,074,722	-				-0.2
5,074,724	-				-0.5
5,074,724	-				+0.7
5,074,786	-				+0.4
5,074,786	-				-0.8
5,074,792	-				-0.4
5,074,840	+		PP_4468	0.19	+0.3
5,074,841	-		PP_4468	0.20	+0.9
5,074,841	-		PP_4468	0.20	-0.8
5,074,876	+		PP_4468	0.27	-0.9
5,074,876	+		PP_4468	0.27	+1.5
5,074,918	-		PP_4468	0.35	-0.1
5,074,983	+		PP_4468	0.48	-2.3
5,074,983	+		PP_4468	0.48	-0.4
5,075,037	+		PP_4468	0.59	+0.1
5,075,037	+		PP_4468	0.59	+0.7
5,075,038	-		PP_4468	0.60	-0.2
5,075,067	+		PP_4468	0.65	+0.7
5,075,067	+				+0.2
5,075,067	+		PP_4468	0.65	+0.3
5,075,067	+		PP_4468	0.65	+2.5
5,075,067	+		PP_4468	0.65	-0.6
5,075,068	-		PP_4468	0.66	+0.7
5,075,068	-		PP_4468	0.66	+0.9
5,075,099	-		PP_4468	0.72	+1.7
5,075,099	-		PP_4468	0.72	+0.7
5,075,099	-		PP_4468	0.72	+0.0
5,075,109	+		PP_4468	0.74	+0.6
5,075,109	+		PP_4468	0.74	+0.2
5,075,109	+		PP_4468	0.74	+0.8
5,075,109	+		PP_4468	0.74	+0.4
5,075,109	+		PP_4468	0.74	-1.5
5,075,109	+		PP_4468	0.74	-2.1
5,075,110	-		PP_4468	0.74	+0.9
5,075,110	-				+1.6
5,075,110	-		PP_4468	0.74	-0.1
5,075,110	-		PP_4468	0.74	-0.1
5,075,110	-		PP_4468	0.74	-0.2
5,075,140	+		PP_4468	0.80	+0.9
5,075,140	+		PP_4468	0.80	-0.2
5,075,176	-		PP_4468	0.88	-0.5
5,075,234	+				-2.8
5,075,234	+				-0.2
5,075,264	+				-1.0
5,075,264	+				-0.5
5,075,264	+				-2.3
5,075,265	-				+2.2
5,075,346	+				-1.5
5,075,347	-				+1.7
5,075,347	-				+1.5
5,075,347	-				+1.1
5,075,364	-				-0.3
5,075,395	+				-0.2
5,075,395	+				-2.5
5,075,395	+				+0.5
5,075,396	-				-0.8
5,075,396	-				+0.0
5,075,404	+				-0.2
5,075,404	+				+0.9
5,075,405	-				+0.5
5,075,405	-				-2.0
5,075,405	-				-1.7
5,075,434	+				-0.2