Strain Fitness in Pseudomonas putida KT2440 around PP_5320

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
6,064,545	+				-2.0
6,064,546	-				+0.2
6,064,561	+				+0.9
6,064,562	-				-1.0
6,064,670	+		PP_5319	0.18	-0.8
6,064,670	+		PP_5319	0.18	+0.2
6,064,671	-		PP_5319	0.19	-2.0
6,064,671	-		PP_5319	0.19	+0.4
6,064,671	-		PP_5319	0.19	-0.1
6,064,672	+		PP_5319	0.19	+0.0
6,064,672	+		PP_5319	0.19	-0.6
6,064,673	-		PP_5319	0.19	+0.7
6,064,673	-		PP_5319	0.19	-0.3
6,064,673	-		PP_5319	0.19	+1.2
6,064,723	-		PP_5319	0.31	-1.5
6,064,736	+		PP_5319	0.34	-0.5
6,064,737	-		PP_5319	0.35	+0.1
6,064,737	-		PP_5319	0.35	-2.3
6,064,840	+		PP_5319	0.59	+1.4
6,064,840	+		PP_5319	0.59	+2.4
6,064,840	+		PP_5319	0.59	+0.8
6,064,841	-		PP_5319	0.59	-0.4
6,064,841	-		PP_5319	0.59	+2.0
6,064,952	+		PP_5319	0.86	+1.3
6,064,952	+		PP_5319	0.86	+1.3
6,064,952	+		PP_5319	0.86	+0.9
6,064,952	+		PP_5319	0.86	+1.1
6,064,953	-		PP_5319	0.86	-3.4
6,064,953	-		PP_5319	0.86	-3.1
6,064,953	-		PP_5319	0.86	-1.1
6,064,953	-		PP_5319	0.86	-1.3
6,064,953	-		PP_5319	0.86	-1.0
6,065,025	+				+2.0
6,065,026	-				+0.3
6,065,031	-				-3.3
6,065,031	-				-1.6
6,065,031	-				-1.3
6,065,031	-				-0.1
6,065,031	-				-1.5
6,065,086	-				+1.7
6,065,098	+				-0.4
6,065,098	+				-3.2
6,065,098	+				-0.6
6,065,098	+				-0.6
6,065,098	+				-1.5
6,065,098	+				-1.5
6,065,098	+				-1.5
6,065,098	+				-0.8
6,065,099	-				+1.3
6,065,099	-				+2.5
6,065,099	-				+1.2
6,065,144	-				+2.2
6,065,445	+		PP_5320	0.47	+1.8
6,065,445	+		PP_5320	0.47	+1.7
6,065,445	+		PP_5320	0.47	+2.0
6,065,446	-		PP_5320	0.47	+2.9
6,065,619	+		PP_5320	0.71	+0.4
6,065,661	+		PP_5320	0.77	+3.3
6,065,662	-		PP_5320	0.77	+1.5
6,065,706	+		PP_5320	0.83	+2.1
6,065,706	+		PP_5320	0.83	+1.2
6,065,706	+		PP_5320	0.83	+2.1
6,065,707	-		PP_5320	0.83	+2.0
6,065,707	-		PP_5320	0.83	+1.4
6,065,707	-		PP_5320	0.83	+1.5
6,065,707	-		PP_5320	0.83	+2.0
6,065,707	-		PP_5320	0.83	+0.5
6,065,720	+		PP_5320	0.85	+0.3
6,065,720	+		PP_5320	0.85	+2.0
6,065,782	+				+0.6
6,065,862	+				+0.9
6,065,863	-				-2.5
6,065,863	-				-0.8
6,065,928	-				+2.4
6,065,962	-				+0.1
6,065,964	+				+2.8
6,065,965	-				+1.6
6,065,965	-				+1.9
6,065,965	-				+0.8
6,065,997	+				+0.8
6,066,082	-		PP_5321	0.16	+2.1
6,066,101	-		PP_5321	0.17	+0.9
6,066,114	+		PP_5321	0.18	+1.4
6,066,114	+		PP_5321	0.18	-0.3
6,066,115	-		PP_5321	0.18	+2.8
6,066,115	-		PP_5321	0.18	+1.9
6,066,115	-		PP_5321	0.18	+2.9
6,066,115	-		PP_5321	0.18	-0.6
6,066,357	+		PP_5321	0.37	+1.8
6,066,357	+		PP_5321	0.37	+2.3