Strain Fitness in Pseudomonas putida KT2440 around PP_5267

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
6,015,958	-		PP_5728	0.14	-0.8
6,015,958	-		PP_5728	0.14	+2.7
6,015,970	+		PP_5728	0.15	-1.7
6,016,099	+		PP_5728	0.30	-1.0
6,016,132	+		PP_5728	0.34	+0.2
6,016,133	-		PP_5728	0.35	-0.6
6,016,170	-		PP_5728	0.39	+0.2
6,016,174	-		PP_5728	0.39	-1.0
6,016,231	+				+0.5
6,016,231	+		PP_5728	0.46	+0.1
6,016,231	+		PP_5728	0.46	-0.3
6,016,232	-		PP_5728	0.46	-0.0
6,016,232	-		PP_5728	0.46	-1.2
6,016,301	-		PP_5728	0.54	+1.4
6,016,398	-		PP_5728	0.66	+1.0
6,016,404	+		PP_5728	0.67	-2.2
6,016,404	+		PP_5728	0.67	+0.9
6,016,405	-		PP_5728	0.67	-3.4
6,016,410	+		PP_5728	0.67	-2.7
6,016,411	-		PP_5728	0.67	+0.3
6,016,457	-		PP_5728	0.73	-1.1
6,016,459	+		PP_5728	0.73	-0.9
6,016,480	+		PP_5728	0.76	+0.8
6,016,505	+		PP_5728	0.79	+0.2
6,016,509	+		PP_5728	0.79	-2.3
6,016,509	+		PP_5728	0.79	-0.9
6,016,510	-		PP_5728	0.79	+0.3
6,016,510	-		PP_5728	0.79	+0.7
6,016,510	-		PP_5728	0.79	+1.1
6,016,543	+		PP_5728	0.83	-0.2
6,016,575	+		PP_5728	0.87	-1.6
6,016,576	-		PP_5728	0.87	-0.3
6,016,582	-		PP_5728	0.88	+1.3
6,016,670	-				+1.3
6,016,688	+				+0.0
6,016,739	-				-1.2
6,016,809	+				-0.8
6,016,907	+				+1.2
6,016,997	+		PP_5267	0.20	-1.3
6,017,003	+		PP_5267	0.22	-2.4
6,017,004	-		PP_5267	0.22	+0.3
6,017,081	+		PP_5267	0.40	-3.2
6,017,292	+				-1.1
6,017,354	+				+0.5
6,017,395	-				-0.3
6,017,558	+		PP_5268	0.16	-0.3
6,017,558	+		PP_5268	0.16	+1.2
6,017,558	+		PP_5268	0.16	+1.3
6,017,559	-		PP_5268	0.16	+0.9
6,017,559	-		PP_5268	0.16	+0.7
6,017,559	-		PP_5268	0.16	-1.0
6,017,561	+		PP_5268	0.17	-1.3
6,017,561	+		PP_5268	0.17	+0.8
6,017,562	-		PP_5268	0.17	-0.5
6,017,562	-		PP_5268	0.17	-0.3
6,017,562	-		PP_5268	0.17	+0.9
6,017,562	-		PP_5268	0.17	+0.7
6,017,769	+		PP_5268	0.54	+0.9
6,017,769	+		PP_5268	0.54	-1.4
6,017,770	-		PP_5268	0.55	-0.2
6,017,770	-		PP_5268	0.55	+1.0
6,017,792	+		PP_5268	0.59	-0.8
6,017,889	+		PP_5268	0.76	+0.6
6,017,890	-		PP_5268	0.77	-2.2
6,017,899	+		PP_5268	0.78	-0.4
6,017,899	+		PP_5268	0.78	+0.5
6,017,899	+		PP_5268	0.78	+0.8
6,017,899	+		PP_5268	0.78	-0.6
6,017,900	-		PP_5268	0.78	+0.5
6,017,900	-		PP_5268	0.78	+0.7
6,018,065	-				-1.9
6,018,065	-				+0.1
6,018,086	-				-1.9
6,018,089	+				+0.8
6,018,089	+				-0.8
6,018,089	+				-2.5
6,018,140	-				+1.5