Strain Fitness in Pseudomonas putida KT2440 around PP_5229

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
5,962,213	-		PP_5227	0.89	+1.5
5,962,236	+				+0.7
5,962,294	+				+0.9
5,962,323	+				+0.1
5,962,323	+				+0.4
5,962,324	-				-1.9
5,962,324	-				-1.1
5,962,350	+				+2.0
5,962,351	-				-0.6
5,962,371	+				+0.4
5,962,541	-		PP_5228	0.25	-0.2
5,962,830	+		PP_5228	0.59	+0.4
5,963,518	-		PP_5229	0.45	+1.4
5,963,733	+		PP_5229	0.75	+0.9
5,963,734	-		PP_5229	0.75	-0.2
5,963,762	+		PP_5229	0.79	+0.0
5,963,763	-		PP_5229	0.79	+0.6
5,963,813	+		PP_5229	0.86	-1.7
5,963,813	+		PP_5229	0.86	-0.5
5,963,813	+		PP_5229	0.86	+1.0
5,963,813	+		PP_5229	0.86	+0.1
5,963,814	-		PP_5229	0.86	+0.9
5,963,846	+				+0.3
5,963,847	-				+0.3
5,963,847	-				-1.5
5,963,847	-				+0.2
5,963,847	-				-0.2
5,963,932	+				-2.6
5,963,932	+				-0.5
5,963,933	-				-3.3
5,963,987	-				-1.0
5,964,151	+		PP_5230	0.27	-1.7
5,964,158	-		PP_5230	0.27	-2.7
5,964,239	+		PP_5230	0.36	-1.5
5,964,331	+		PP_5230	0.47	-2.1
5,964,344	+		PP_5230	0.48	-0.0
5,964,344	+		PP_5230	0.48	-1.1
5,964,410	+		PP_5230	0.55	-0.2
5,964,410	+		PP_5230	0.55	-2.6
5,964,411	-		PP_5230	0.56	+0.1
5,964,411	-		PP_5230	0.56	-0.8
5,964,481	+		PP_5230	0.63	-2.2
5,964,724	+				-0.4
5,964,725	-				-1.0
5,964,761	-				+0.5