Strain Fitness in Pseudomonas putida KT2440 around PP_5216

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
5,948,488	-				-1.2
5,948,488	-				-0.6
5,948,496	-				-1.6
5,948,510	-				-1.9
5,948,523	-				+1.1
5,948,523	-				+1.2
5,948,573	-				+0.3
5,948,597	-				+0.7
5,948,597	-				-0.6
5,948,597	-				+1.5
5,948,597	-				-0.7
5,948,655	-				-1.6
5,949,035	-				+0.1
5,949,035	-				-1.5
5,949,049	-				-1.5
5,949,082	-				-2.3
5,949,114	+				+1.7
5,949,114	+				-0.2
5,949,114	+				+1.3
5,949,115	-				-0.9
5,949,115	-				-0.7
5,949,115	-				+0.5
5,949,115	-				-0.6
5,949,115	-				+0.9
5,949,115	-				-1.0
5,949,115	-				-0.9
5,949,118	+				-0.1
5,949,119	-				-0.5
5,949,119	-				-0.9
5,949,120	+				+0.1
5,949,120	+				+0.7
5,949,120	+				-1.8
5,949,120	+				-0.4
5,949,120	+				+0.9
5,949,121	-				-0.1
5,949,121	-				-1.3
5,949,154	+				-0.7
5,949,154	+				-0.7
5,949,155	-				-2.5
5,949,155	-				-0.7
5,949,165	+				+1.1
5,949,166	-				-3.0
5,949,166	-				+0.8
5,949,202	+				-2.0
5,949,203	-				-0.8
5,949,203	-				-2.1
5,949,292	+				-1.4
5,949,292	+				+1.0
5,949,293	-				+1.3
5,949,657	-		PP_5216	0.25	-0.2
5,949,800	-		PP_5216	0.34	-1.7
5,949,810	-				-0.2
5,949,854	+		PP_5216	0.38	+1.7
5,949,855	-		PP_5216	0.38	-1.2
5,950,259	+		PP_5216	0.65	-2.2
5,950,260	-		PP_5216	0.65	-2.5
5,950,416	-		PP_5216	0.75	-2.5
5,950,647	+				-0.9
5,950,648	-				-1.7
5,950,648	-				-0.3
5,950,680	+				-1.3
5,950,680	+				-1.9
5,950,780	-				+0.7
5,950,867	+				+1.9
5,950,868	-				+2.5
5,950,868	-				+1.4
5,950,901	+				+3.1
5,951,026	+		PP_5217	0.12	+0.9
5,951,026	+		PP_5217	0.12	-0.1
5,951,027	-		PP_5217	0.12	-2.7
5,951,027	-		PP_5217	0.12	+0.1
5,951,056	+		PP_5217	0.13	+1.9
5,951,056	+		PP_5217	0.13	+1.5
5,951,057	-				-0.7
5,951,057	-		PP_5217	0.13	+1.5
5,951,197	+		PP_5217	0.19	+0.2
5,951,197	+		PP_5217	0.19	+0.1
5,951,197	+		PP_5217	0.19	+1.0
5,951,197	+		PP_5217	0.19	+2.2
5,951,197	+		PP_5217	0.19	+1.9
5,951,198	-		PP_5217	0.19	+2.0
5,951,198	-		PP_5217	0.19	+1.5
5,951,315	+		PP_5217	0.25	+1.2
5,951,315	+		PP_5217	0.25	-0.2
5,951,434	+		PP_5217	0.30	+0.2
5,951,443	+		PP_5217	0.31	+1.3
5,951,443	+		PP_5217	0.31	+1.5
5,951,467	+		PP_5217	0.32	+1.9
5,951,468	-		PP_5217	0.32	+0.6
5,951,468	-		PP_5217	0.32	+1.1
5,951,468	-		PP_5217	0.32	+0.7
5,951,492	-		PP_5217	0.33	+1.4
5,951,566	+		PP_5217	0.36	+2.0
5,951,566	+		PP_5217	0.36	+1.0
5,951,566	+		PP_5217	0.36	+1.8
5,951,567	-		PP_5217	0.36	+0.8
5,951,567	-				+0.8
5,951,567	-		PP_5217	0.36	+1.4
5,951,567	-		PP_5217	0.36	-0.5
5,951,567	-		PP_5217	0.36	+1.3
5,951,567	-		PP_5217	0.36	+1.8
5,951,574	+		PP_5217	0.37	+0.9
5,951,575	-		PP_5217	0.37	+1.8