Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5161 and PP_5162 are separated by 129 nucleotides PP_5162 and PP_5163 overlap by 22 nucleotides PP_5163 and PP_5164 are separated by 86 nucleotides
PP_5161: PP_5161 - putative lysophospholipase, at 5,886,014 to 5,887,015
_5161
PP_5162: PP_5162 - conserved exported protein of unknown function, at 5,887,145 to 5,887,714
_5162
PP_5163: PP_5163 - maltose acetyltransferase, at 5,887,693 to 5,888,259
_5163
PP_5164: PP_5164 - Penicillin amidase family protein, at 5,888,346 to 5,890,712
_5164
Position (kb) 5887
5888 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5886.382 kb on - strand, within PP_5161 at 5886.585 kb on + strand, within PP_5161 at 5886.717 kb on + strand, within PP_5161 at 5886.717 kb on + strand, within PP_5161 at 5886.718 kb on - strand, within PP_5161 at 5886.840 kb on + strand, within PP_5161 at 5886.841 kb on - strand, within PP_5161 at 5886.945 kb on + strand at 5886.946 kb on - strand at 5886.966 kb on - strand at 5886.966 kb on - strand at 5886.966 kb on - strand at 5887.038 kb on - strand at 5887.038 kb on - strand at 5887.150 kb on + strand at 5887.203 kb on + strand, within PP_5162 at 5887.221 kb on - strand, within PP_5162 at 5887.242 kb on - strand, within PP_5162 at 5887.296 kb on + strand, within PP_5162 at 5887.297 kb on - strand, within PP_5162 at 5887.297 kb on - strand, within PP_5162 at 5887.297 kb on - strand, within PP_5162 at 5887.396 kb on + strand, within PP_5162 at 5887.424 kb on - strand, within PP_5162 at 5887.424 kb on - strand, within PP_5162 at 5887.571 kb on + strand, within PP_5162 at 5887.571 kb on + strand, within PP_5162 at 5887.571 kb on + strand, within PP_5162 at 5887.584 kb on - strand, within PP_5162 at 5887.675 kb on + strand at 5887.694 kb on + strand at 5887.694 kb on + strand at 5887.695 kb on - strand at 5887.798 kb on - strand, within PP_5163 at 5887.928 kb on + strand, within PP_5163 at 5887.928 kb on + strand, within PP_5163 at 5887.929 kb on - strand, within PP_5163 at 5887.929 kb on - strand, within PP_5163 at 5887.929 kb on - strand, within PP_5163 at 5887.929 kb on - strand, within PP_5163 at 5887.929 kb on - strand at 5888.017 kb on - strand, within PP_5163 at 5888.019 kb on + strand, within PP_5163 at 5888.019 kb on + strand, within PP_5163 at 5888.019 kb on + strand, within PP_5163 at 5888.020 kb on - strand, within PP_5163 at 5888.039 kb on + strand, within PP_5163 at 5888.040 kb on - strand, within PP_5163 at 5888.040 kb on - strand, within PP_5163 at 5888.045 kb on + strand, within PP_5163 at 5888.055 kb on - strand, within PP_5163 at 5888.153 kb on + strand, within PP_5163 at 5888.195 kb on - strand, within PP_5163 at 5888.195 kb on - strand, within PP_5163 at 5888.195 kb on - strand, within PP_5163 at 5888.279 kb on + strand at 5888.279 kb on + strand at 5888.280 kb on - strand at 5888.280 kb on - strand at 5888.378 kb on - strand at 5888.413 kb on - strand at 5888.553 kb on + strand at 5888.593 kb on + strand, within PP_5164 at 5888.594 kb on - strand, within PP_5164 at 5888.594 kb on - strand, within PP_5164
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 5,886,382 - PP_5161 0.37 +0.9 5,886,585 + PP_5161 0.57 +0.5 5,886,717 + PP_5161 0.70 +1.0 5,886,717 + PP_5161 0.70 +0.9 5,886,718 - PP_5161 0.70 -0.3 5,886,840 + PP_5161 0.82 +2.5 5,886,841 - PP_5161 0.83 +0.9 5,886,945 + +0.6 5,886,946 - +1.1 5,886,966 - -0.4 5,886,966 - -1.0 5,886,966 - +0.1 5,887,038 - +0.4 5,887,038 - -1.5 5,887,150 + -0.6 5,887,203 + PP_5162 0.10 -2.1 5,887,221 - PP_5162 0.13 -2.7 5,887,242 - PP_5162 0.17 -0.5 5,887,296 + PP_5162 0.26 -0.9 5,887,297 - PP_5162 0.27 -2.8 5,887,297 - PP_5162 0.27 -0.2 5,887,297 - PP_5162 0.27 -1.9 5,887,396 + PP_5162 0.44 +0.1 5,887,424 - PP_5162 0.49 -0.4 5,887,424 - PP_5162 0.49 -1.9 5,887,571 + PP_5162 0.75 -0.0 5,887,571 + PP_5162 0.75 +0.4 5,887,571 + PP_5162 0.75 -0.7 5,887,584 - PP_5162 0.77 -1.4 5,887,675 + -2.7 5,887,694 + -1.5 5,887,694 + -2.6 5,887,695 - -1.1 5,887,798 - PP_5163 0.19 -0.5 5,887,928 + PP_5163 0.41 -0.5 5,887,928 + PP_5163 0.41 -0.6 5,887,929 - PP_5163 0.42 +0.8 5,887,929 - PP_5163 0.42 +0.3 5,887,929 - PP_5163 0.42 -0.4 5,887,929 - PP_5163 0.42 -0.1 5,887,929 - -0.5 5,888,017 - PP_5163 0.57 +0.5 5,888,019 + PP_5163 0.57 -1.0 5,888,019 + PP_5163 0.57 +0.4 5,888,019 + PP_5163 0.57 -0.4 5,888,020 - PP_5163 0.58 +0.5 5,888,039 + PP_5163 0.61 +0.3 5,888,040 - PP_5163 0.61 -1.1 5,888,040 - PP_5163 0.61 +0.6 5,888,045 + PP_5163 0.62 -0.3 5,888,055 - PP_5163 0.64 +0.3 5,888,153 + PP_5163 0.81 -0.8 5,888,195 - PP_5163 0.89 +0.5 5,888,195 - PP_5163 0.89 +0.1 5,888,195 - PP_5163 0.89 +0.5 5,888,279 + -1.8 5,888,279 + -0.3 5,888,280 - +0.1 5,888,280 - +0.9 5,888,378 - +0.4 5,888,413 - +1.8 5,888,553 + +0.4 5,888,593 + PP_5164 0.10 +1.1 5,888,594 - PP_5164 0.10 +0.4 5,888,594 - PP_5164 0.10 +0.9
Or see this region's nucleotide sequence