Strain Fitness in Pseudomonas putida KT2440 around PP_5140
Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | C.elegans, mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
5,865,508 | + | PP_5139 | 0.71 | +0.8 | |
5,865,537 | - | PP_5139 | 0.73 | +1.0 | |
5,865,556 | + | PP_5139 | 0.74 | -2.2 | |
5,865,556 | + | PP_5139 | 0.74 | -0.1 | |
5,865,556 | + | PP_5139 | 0.74 | +1.4 | |
5,865,557 | - | PP_5139 | 0.74 | -1.7 | |
5,865,615 | + | PP_5139 | 0.76 | -1.0 | |
5,865,615 | + | PP_5139 | 0.76 | +0.1 | |
5,865,616 | - | -0.2 | |||
5,865,616 | - | PP_5139 | 0.76 | +0.1 | |
5,866,203 | + | -3.2 | |||
5,866,288 | + | PP_5140 | 0.12 | -0.4 | |
5,866,288 | + | PP_5140 | 0.12 | -1.6 | |
5,866,291 | + | PP_5140 | 0.13 | -3.2 | |
5,866,292 | - | PP_5140 | 0.13 | -3.6 | |
5,866,292 | - | PP_5140 | 0.13 | -1.2 | |
5,866,339 | + | -0.2 | |||
5,866,340 | - | PP_5140 | 0.24 | -1.8 | |
5,866,349 | - | PP_5140 | 0.26 | -2.5 | |
5,866,724 | + | -0.1 | |||
5,866,725 | - | -1.5 | |||
5,866,725 | - | +1.0 | |||
5,866,732 | + | +0.7 | |||
5,866,732 | + | +0.7 | |||
5,866,732 | + | +1.0 | |||
5,866,732 | + | -0.3 |
Or see this region's nucleotide sequence