Strain Fitness in Pseudomonas putida KT2440 around PP_5140

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
5,865,508	+		PP_5139	0.71	+0.8
5,865,537	-		PP_5139	0.73	+1.0
5,865,556	+		PP_5139	0.74	-2.2
5,865,556	+		PP_5139	0.74	-0.1
5,865,556	+		PP_5139	0.74	+1.4
5,865,557	-		PP_5139	0.74	-1.7
5,865,615	+		PP_5139	0.76	-1.0
5,865,615	+		PP_5139	0.76	+0.1
5,865,616	-				-0.2
5,865,616	-		PP_5139	0.76	+0.1
5,866,203	+				-3.2
5,866,288	+		PP_5140	0.12	-0.4
5,866,288	+		PP_5140	0.12	-1.6
5,866,291	+		PP_5140	0.13	-3.2
5,866,292	-		PP_5140	0.13	-3.6
5,866,292	-		PP_5140	0.13	-1.2
5,866,339	+				-0.2
5,866,340	-		PP_5140	0.24	-1.8
5,866,349	-		PP_5140	0.26	-2.5
5,866,724	+				-0.1
5,866,725	-				-1.5
5,866,725	-				+1.0
5,866,732	+				+0.7
5,866,732	+				+0.7
5,866,732	+				+1.0
5,866,732	+				-0.3