Strain Fitness in Pseudomonas putida KT2440 around PP_5058

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
5,763,045	+		PP_5057	0.32	-0.1
5,763,046	-		PP_5057	0.32	-0.8
5,763,046	-		PP_5057	0.32	-2.4
5,763,046	-		PP_5057	0.32	+0.1
5,763,046	-		PP_5057	0.32	+1.4
5,763,046	-		PP_5057	0.32	+0.6
5,763,046	-		PP_5057	0.32	-0.3
5,763,048	+		PP_5057	0.32	-0.2
5,763,048	+		PP_5057	0.32	+0.6
5,763,048	+		PP_5057	0.32	-0.1
5,763,048	+		PP_5057	0.32	+0.5
5,763,049	-		PP_5057	0.32	+1.3
5,763,054	+		PP_5057	0.33	-0.5
5,763,054	+		PP_5057	0.33	-1.6
5,763,226	+		PP_5057	0.46	+0.1
5,763,535	-		PP_5057	0.69	+0.7
5,763,651	-		PP_5057	0.78	-1.7
5,763,765	+		PP_5057	0.87	-3.5
5,763,882	+				-1.9
5,763,883	-				-3.0
5,764,210	-		PP_5058	0.14	-1.7
5,764,210	-		PP_5058	0.14	-1.6
5,764,223	-		PP_5058	0.15	-2.4
5,764,265	+		PP_5058	0.19	-0.2
5,764,265	+		PP_5058	0.19	-1.9
5,764,266	-		PP_5058	0.19	-1.8
5,764,291	-		PP_5058	0.21	-3.0
5,764,363	+		PP_5058	0.26	-2.2
5,764,363	+		PP_5058	0.26	-1.8
5,764,363	+		PP_5058	0.26	+0.2
5,764,391	-		PP_5058	0.28	-1.8
5,764,625	-		PP_5058	0.46	-1.2
5,764,638	+		PP_5058	0.47	-0.1
5,764,644	+		PP_5058	0.47	-2.8
5,764,645	-		PP_5058	0.47	-0.2
5,764,912	+		PP_5058	0.68	-2.3
5,765,076	+		PP_5058	0.80	-1.3
5,765,079	+		PP_5058	0.80	-2.9
5,765,079	+		PP_5058	0.80	-2.1
5,765,079	+		PP_5058	0.80	-1.9
5,765,079	+		PP_5058	0.80	-2.1
5,765,080	-		PP_5058	0.80	-1.7
5,765,080	-		PP_5058	0.80	-0.7
5,765,080	-		PP_5058	0.80	-1.4
5,765,344	+				+0.1
5,765,344	+				+0.3
5,765,344	+				+0.2
5,765,345	-				+0.5
5,765,345	-				+0.4
5,765,345	-				+1.0
5,765,351	+				+0.3
5,765,352	-				-0.9
5,765,352	-				-0.4
5,765,417	+				-0.9
5,765,417	+				+0.0
5,765,417	+				-0.7
5,765,417	+				+0.2
5,765,418	-				-2.2
5,765,606	+		PP_5059	0.34	+0.7
5,765,606	+		PP_5059	0.34	+0.0
5,765,606	+		PP_5059	0.34	-0.8
5,765,606	+		PP_5059	0.34	-0.9
5,765,847	+		PP_5059	0.65	+0.4
5,765,847	+		PP_5059	0.65	+0.9
5,765,848	-		PP_5059	0.65	-1.9
5,765,859	+		PP_5059	0.67	-1.1
5,765,860	-		PP_5059	0.67	-1.4
5,765,860	-		PP_5059	0.67	+0.5
5,765,915	-		PP_5059	0.74	+1.0
5,765,915	-		PP_5059	0.74	-0.3
5,766,085	+				-2.5
5,766,085	+				+0.4
5,766,193	+				-0.9
5,766,212	-				-0.0
5,766,222	+				+0.9
5,766,222	+				+0.6
5,766,223	-				-0.8
5,766,223	-				-0.5