Strain Fitness in Pseudomonas putida KT2440 around PP_4900

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
5,569,390	-				-2.0
5,569,463	-				-2.6
5,569,687	+		PP_4899	0.35	+0.1
5,569,688	-		PP_4899	0.35	+0.6
5,569,688	-		PP_4899	0.35	-0.7
5,569,690	-		PP_4899	0.35	-0.0
5,569,734	-		PP_4899	0.40	-2.2
5,569,734	-		PP_4899	0.40	-1.3
5,569,786	+		PP_4899	0.46	+0.3
5,569,787	-		PP_4899	0.46	-0.0
5,569,787	-		PP_4899	0.46	-0.6
5,569,894	+		PP_4899	0.59	-0.9
5,569,895	-		PP_4899	0.59	-2.9
5,569,895	-		PP_4899	0.59	-0.0
5,569,895	-				+0.6
5,569,895	-		PP_4899	0.59	-3.0
5,570,138	+		PP_4899	0.87	-0.2
5,570,138	+		PP_4899	0.87	+0.1
5,570,138	+		PP_4899	0.87	-0.0
5,570,138	+		PP_4899	0.87	-1.8
5,570,138	+		PP_4899	0.87	-0.3
5,570,138	+		PP_4899	0.87	+0.3
5,570,138	+		PP_4899	0.87	+1.9
5,570,138	+		PP_4899	0.87	+1.8
5,570,139	-		PP_4899	0.87	-0.3
5,570,139	-		PP_4899	0.87	-1.1
5,570,139	-		PP_4899	0.87	+0.7
5,570,139	-		PP_4899	0.87	+3.4
5,570,139	-		PP_4899	0.87	-1.3
5,570,139	-		PP_4899	0.87	-0.6
5,570,139	-		PP_4899	0.87	-1.9
5,570,139	-		PP_4899	0.87	+1.0
5,570,139	-		PP_4899	0.87	+0.4
5,570,225	-				-1.8
5,570,225	-				-1.3
5,570,279	+				-0.6
5,570,279	+				+0.2
5,570,280	-				-0.0
5,570,280	-				-0.0
5,570,281	+				+0.9
5,570,282	-				+0.2
5,570,282	-				-1.4
5,570,282	-				-0.9
5,570,325	+				+0.2
5,570,326	-				-2.0
5,570,477	-		PP_4900	0.15	-1.6
5,570,535	-		PP_4900	0.21	-1.7
5,570,550	-		PP_4900	0.22	-2.6
5,570,553	+		PP_4900	0.22	-3.6
5,570,553	+		PP_4900	0.22	-1.8
5,570,554	-		PP_4900	0.23	-0.5
5,570,554	-		PP_4900	0.23	-0.8
5,570,554	-		PP_4900	0.23	-2.8
5,570,560	+		PP_4900	0.23	-2.6
5,570,561	-		PP_4900	0.23	-3.6
5,570,561	-		PP_4900	0.23	-0.7
5,570,614	+		PP_4900	0.28	-0.4
5,570,614	+		PP_4900	0.28	-0.2
5,570,614	+		PP_4900	0.28	-2.3
5,570,614	+		PP_4900	0.28	-1.4
5,570,615	-		PP_4900	0.28	-3.9
5,570,615	-		PP_4900	0.28	-0.6
5,570,615	-		PP_4900	0.28	-1.2
5,570,615	-		PP_4900	0.28	+0.3
5,570,644	+		PP_4900	0.31	-3.6
5,570,827	+		PP_4900	0.48	-1.6
5,570,827	+		PP_4900	0.48	+0.7
5,570,827	+		PP_4900	0.48	-0.9
5,570,828	-		PP_4900	0.48	-1.9
5,570,953	+		PP_4900	0.60	-2.2
5,570,953	+		PP_4900	0.60	-2.0
5,570,953	+		PP_4900	0.60	-1.4
5,570,953	+		PP_4900	0.60	-0.6
5,570,953	+		PP_4900	0.60	-1.9
5,570,953	+		PP_4900	0.60	+0.1
5,570,953	+		PP_4900	0.60	-1.1
5,571,535	+				-0.4
5,571,641	-		PP_4901	0.20	-0.2
5,571,688	+		PP_4901	0.28	+0.8
5,571,689	-		PP_4901	0.28	-0.9
5,571,689	-		PP_4901	0.28	+0.9
5,571,689	-		PP_4901	0.28	-0.6
5,571,732	-		PP_4901	0.35	+0.3
5,571,825	+		PP_4901	0.50	-0.4
5,571,825	+		PP_4901	0.50	-0.7
5,571,825	+		PP_4901	0.50	-0.8
5,571,825	+		PP_4901	0.50	+0.5
5,571,826	-		PP_4901	0.50	-1.9
5,571,944	-		PP_4901	0.69	+0.4
5,572,114	+				-0.4
5,572,115	-				-0.4
5,572,163	+				-0.1
5,572,164	-				+0.6
5,572,199	+				+2.6
5,572,199	+				-0.3
5,572,199	+				+0.3
5,572,199	+				-0.2
5,572,200	-				+0.5
5,572,204	+				+0.5
5,572,204	+				+0.3
5,572,204	+				-1.5
5,572,204	+				+1.6
5,572,205	-				+0.2
5,572,205	-				+0.2
5,572,205	-				+1.5
5,572,205	-				+1.3
5,572,205	-				-0.6
5,572,299	+		PP_4902	0.14	-2.2