Strain Fitness in Pseudomonas putida KT2440 around PP_4893

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
5,562,065	-		PP_4892	0.33	-2.0
5,562,065	-		PP_4892	0.33	+3.1
5,562,163	-		PP_4892	0.41	-2.0
5,562,163	-		PP_4892	0.41	-0.9
5,562,196	+		PP_4892	0.43	-0.4
5,562,196	+		PP_4892	0.43	+0.1
5,562,196	+		PP_4892	0.43	-1.6
5,562,197	-		PP_4892	0.44	-0.2
5,562,197	-		PP_4892	0.44	-0.9
5,562,197	-		PP_4892	0.44	-1.3
5,562,382	+		PP_4892	0.59	-0.3
5,562,383	-		PP_4892	0.59	-1.4
5,562,448	+		PP_4892	0.64	-1.0
5,562,448	+		PP_4892	0.64	-1.0
5,562,448	+		PP_4892	0.64	-1.6
5,562,502	+		PP_4892	0.69	-1.9
5,562,502	+		PP_4892	0.69	+0.1
5,562,503	-		PP_4892	0.69	-0.4
5,562,532	+		PP_4892	0.71	-1.6
5,562,532	+		PP_4892	0.71	-0.9
5,562,532	+				+0.1
5,562,533	-		PP_4892	0.71	-0.7
5,562,533	-		PP_4892	0.71	-0.4
5,562,533	-		PP_4892	0.71	-2.4
5,562,533	-		PP_4892	0.71	-1.8
5,562,533	-		PP_4892	0.71	-0.9
5,562,534	+		PP_4892	0.71	-0.9
5,562,536	-		PP_4892	0.71	-1.3
5,562,536	-		PP_4892	0.71	-1.7
5,562,583	+		PP_4892	0.75	-0.7
5,562,583	+		PP_4892	0.75	+0.6
5,562,584	-		PP_4892	0.75	-1.4
5,562,584	-		PP_4892	0.75	+0.1
5,562,584	-		PP_4892	0.75	-2.2
5,562,584	-		PP_4892	0.75	-1.0
5,562,865	+				-2.5
5,563,297	+		PP_4893	0.27	-3.2
5,563,297	+		PP_4893	0.27	-1.9
5,563,298	-		PP_4893	0.27	-1.4
5,563,298	-		PP_4893	0.27	-2.8
5,563,298	-		PP_4893	0.27	-0.4
5,563,298	-		PP_4893	0.27	-0.7
5,563,298	-		PP_4893	0.27	-3.6
5,563,485	+		PP_4893	0.41	-1.0
5,563,486	-		PP_4893	0.42	-1.4
5,563,576	+		PP_4893	0.48	+0.8
5,563,576	+		PP_4893	0.48	+0.6
5,563,576	+		PP_4893	0.48	+0.6
5,563,577	-		PP_4893	0.49	-2.6
5,563,628	+		PP_4893	0.52	-1.1
5,563,628	+		PP_4893	0.52	+0.2
5,563,628	+		PP_4893	0.52	-0.2
5,563,629	-		PP_4893	0.53	-3.7
5,563,629	-		PP_4893	0.53	-2.7
5,563,629	-		PP_4893	0.53	-1.9
5,563,629	-		PP_4893	0.53	-1.7
5,563,629	-		PP_4893	0.53	+0.9
5,563,629	-		PP_4893	0.53	-1.1
5,563,630	+		PP_4893	0.53	+1.4
5,563,630	+		PP_4893	0.53	+0.6
5,563,630	+		PP_4893	0.53	+0.8
5,563,631	-		PP_4893	0.53	-1.9
5,563,731	+		PP_4893	0.60	-2.0
5,563,731	+		PP_4893	0.60	-1.0
5,563,731	+		PP_4893	0.60	-0.5
5,563,732	-		PP_4893	0.60	-3.3
5,563,733	+		PP_4893	0.61	-0.6
5,563,733	+		PP_4893	0.61	-1.2
5,563,734	-		PP_4893	0.61	-1.6
5,563,734	-		PP_4893	0.61	-1.9
5,563,734	-		PP_4893	0.61	-3.8
5,563,917	-		PP_4893	0.75	-0.5
5,564,019	+		PP_4893	0.82	-1.9
5,564,077	+		PP_4893	0.87	-1.6
5,564,078	-		PP_4893	0.87	-2.6
5,564,257	+				-0.9
5,564,799	-		PP_4895	0.19	-0.9
5,564,985	-		PP_4895	0.38	+0.3
5,565,080	-		PP_4895	0.48	-2.9
5,565,080	-		PP_4895	0.48	-0.4
5,565,080	-		PP_4895	0.48	+0.1
5,565,124	-		PP_4895	0.52	-0.4