Strain Fitness in Pseudomonas putida KT2440 around PP_4517

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
5,130,656	+		PP_4516	0.65	+1.2
5,130,784	+		PP_4516	0.71	-1.8
5,130,785	-		PP_4516	0.71	+0.6
5,130,943	+		PP_4516	0.79	-0.0
5,130,944	-		PP_4516	0.79	+0.7
5,130,944	-		PP_4516	0.79	-1.9
5,131,069	+		PP_4516	0.84	+0.0
5,131,069	+		PP_4516	0.84	-0.3
5,131,070	-		PP_4516	0.84	+1.0
5,131,136	+		PP_4516	0.88	-0.2
5,131,216	-				+1.6
5,131,293	+				+0.0
5,131,424	-				+1.1
5,131,534	+				-0.4
5,131,535	-				+1.7
5,131,535	-				+0.4
5,131,571	+				+1.4
5,131,637	+				-1.5
5,131,637	+				+0.8
5,131,645	+				-0.8
5,131,645	+				+0.2
5,131,645	+				+0.2
5,131,645	+				-0.4
5,131,646	-				-1.4
5,131,646	-				+0.1
5,131,646	-				-0.4
5,131,646	-				-0.5
5,131,646	-				-0.5
5,131,646	-				-3.0
5,131,646	-				-1.0
5,131,646	-				+0.2
5,131,722	+		PP_4517	0.13	-1.7
5,131,723	-		PP_4517	0.13	-0.8
5,131,740	+		PP_4517	0.16	-1.8
5,131,822	-		PP_4517	0.30	-1.3
5,132,300	+		PP_4518	0.16	-0.4
5,132,425	+		PP_4518	0.50	-0.7
5,132,425	+		PP_4518	0.50	+0.1
5,132,464	+		PP_4518	0.61	-0.2
5,132,465	-		PP_4518	0.61	-2.1
5,132,569	+		PP_4518	0.89	+0.5
5,132,569	+		PP_4518	0.89	+1.1
5,132,569	+		PP_4518	0.89	+0.2
5,132,570	-		PP_4518	0.90	-1.7
5,132,570	-		PP_4518	0.90	+0.2
5,132,570	-		PP_4518	0.90	-1.7
5,132,570	-		PP_4518	0.90	-0.9
5,132,570	-		PP_4518	0.90	-1.9
5,132,570	-				+0.6
5,132,683	-				-1.5
5,132,683	-				-0.7
5,132,691	+				+0.5
5,132,692	-				-1.6
5,132,692	-				-1.1
5,132,748	+				+0.4
5,132,749	-				-3.8
5,132,765	-				-2.0
5,132,767	+				-1.5
5,132,768	-				-3.0
5,132,788	+				+0.8
5,132,820	+				+0.1
5,132,820	+				-0.9
5,132,820	+				+0.2
5,132,820	+				-0.6
5,132,820	+				-2.3
5,132,821	-				-3.1
5,132,821	-				-2.0
5,132,821	-				-1.0
5,132,821	-				-4.4
5,132,848	+				-1.5
5,132,850	+				-1.3
5,132,850	+				+0.4
5,132,858	-				-3.0
5,132,915	+				-3.4
5,132,915	+				-3.0
5,132,915	+				-2.7
5,132,915	+				-4.4
5,132,915	+				-3.9
5,132,915	+				-1.2
5,132,915	+				-3.7
5,132,915	+				-2.8
5,132,916	-				-1.2
5,132,916	-				-3.4
5,132,950	+				-3.5
5,132,950	+				-4.2
5,132,951	-				-3.6
5,132,977	+				-3.1
5,132,977	+				-1.8
5,132,978	-				-3.2
5,132,978	-				-2.0
5,132,994	-				-2.1
5,133,022	-				-1.8
5,133,047	+				-2.3
5,133,048	-				-3.5
5,133,096	+		PP_4519	0.13	-1.8
5,133,097	-		PP_4519	0.13	-3.0
5,133,097	-		PP_4519	0.13	-2.9
5,133,097	-		PP_4519	0.13	-1.5
5,133,097	-		PP_4519	0.13	-2.5
5,133,097	-		PP_4519	0.13	-1.8
5,133,099	+		PP_4519	0.13	-1.3
5,133,099	+		PP_4519	0.13	-1.5
5,133,099	+		PP_4519	0.13	-1.8
5,133,100	-		PP_4519	0.13	-3.4
5,133,127	-		PP_4519	0.15	-3.6
5,133,155	+		PP_4519	0.17	-1.0
5,133,195	+		PP_4519	0.20	-3.7
5,133,196	-		PP_4519	0.20	-3.8
5,133,196	-		PP_4519	0.20	-3.0
5,133,196	-		PP_4519	0.20	-2.0