Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4482 and PP_4483 are separated by 98 nucleotides PP_4483 and PP_4484 are separated by 22 nucleotides PP_4484 and PP_4485 overlap by 4 nucleotides PP_4485 and PP_4486 are separated by 88 nucleotides
PP_4482: PP_4482 - Transcriptional regulator, AraC family, at 5,092,641 to 5,093,621
_4482
PP_4483: PP_4483 - histidine lysine / arginine / ornithine ABC transporter - ATP binding subunit, at 5,093,720 to 5,094,484
_4483
PP_4484: PP_4484 - histidine / lysine / arginine / ornithine ABC transporter - permease subunit, at 5,094,507 to 5,095,205
_4484
PP_4485: PP_4485 - histidine / lysine / arginine / ornithine ABC transporter - permease subunit, at 5,095,202 to 5,095,891
_4485
PP_4486: PP_4486 - lysine / arginine / ornithine ABC transporter - periplasmic binding protein, at 5,095,980 to 5,096,765
_4486
Position (kb) 5094
5095
5096 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5093.509 kb on + strand, within PP_4482 at 5093.509 kb on + strand, within PP_4482 at 5093.509 kb on + strand, within PP_4482 at 5093.621 kb on + strand at 5093.621 kb on + strand at 5093.621 kb on + strand at 5093.622 kb on - strand at 5093.622 kb on - strand at 5093.622 kb on - strand at 5093.622 kb on - strand at 5093.626 kb on + strand at 5093.696 kb on + strand at 5093.721 kb on + strand at 5093.722 kb on - strand at 5093.876 kb on + strand, within PP_4483 at 5093.877 kb on - strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.037 kb on + strand, within PP_4483 at 5094.038 kb on - strand, within PP_4483 at 5094.038 kb on - strand, within PP_4483 at 5094.038 kb on - strand, within PP_4483 at 5094.087 kb on + strand, within PP_4483 at 5094.088 kb on - strand, within PP_4483 at 5094.088 kb on - strand, within PP_4483 at 5094.480 kb on + strand at 5094.481 kb on - strand at 5094.481 kb on - strand at 5094.592 kb on + strand, within PP_4484 at 5094.592 kb on + strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.593 kb on - strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.611 kb on + strand, within PP_4484 at 5094.612 kb on - strand, within PP_4484 at 5094.613 kb on + strand, within PP_4484 at 5094.613 kb on + strand, within PP_4484 at 5094.613 kb on + strand, within PP_4484 at 5094.614 kb on - strand, within PP_4484 at 5094.631 kb on + strand, within PP_4484 at 5094.631 kb on + strand, within PP_4484 at 5094.631 kb on + strand, within PP_4484 at 5094.632 kb on - strand, within PP_4484 at 5094.632 kb on - strand, within PP_4484 at 5094.634 kb on + strand, within PP_4484 at 5094.635 kb on - strand, within PP_4484 at 5094.635 kb on - strand, within PP_4484 at 5094.734 kb on - strand, within PP_4484 at 5094.781 kb on + strand, within PP_4484 at 5094.874 kb on + strand, within PP_4484 at 5094.874 kb on + strand, within PP_4484 at 5094.874 kb on + strand, within PP_4484 at 5094.874 kb on + strand, within PP_4484 at 5094.884 kb on + strand, within PP_4484 at 5094.885 kb on - strand, within PP_4484 at 5094.917 kb on + strand, within PP_4484 at 5094.917 kb on + strand, within PP_4484 at 5094.917 kb on + strand, within PP_4484 at 5094.918 kb on - strand, within PP_4484 at 5094.918 kb on - strand, within PP_4484 at 5094.918 kb on - strand, within PP_4484 at 5094.944 kb on + strand, within PP_4484 at 5094.944 kb on + strand, within PP_4484 at 5094.982 kb on + strand, within PP_4484 at 5094.983 kb on - strand, within PP_4484 at 5094.983 kb on - strand, within PP_4484 at 5095.027 kb on + strand, within PP_4484 at 5095.027 kb on + strand, within PP_4484 at 5095.027 kb on + strand, within PP_4484 at 5095.027 kb on + strand, within PP_4484 at 5095.027 kb on + strand, within PP_4484 at 5095.028 kb on - strand, within PP_4484 at 5095.028 kb on - strand, within PP_4484 at 5095.028 kb on - strand, within PP_4484 at 5095.028 kb on - strand, within PP_4484 at 5095.033 kb on + strand, within PP_4484 at 5095.033 kb on + strand, within PP_4484 at 5095.033 kb on + strand, within PP_4484 at 5095.034 kb on - strand, within PP_4484 at 5095.034 kb on - strand, within PP_4484 at 5095.034 kb on - strand, within PP_4484 at 5095.163 kb on - strand at 5095.193 kb on - strand at 5095.205 kb on + strand at 5095.205 kb on + strand at 5095.206 kb on - strand at 5095.249 kb on - strand at 5095.249 kb on - strand at 5095.249 kb on - strand at 5095.287 kb on + strand, within PP_4485 at 5095.287 kb on + strand, within PP_4485 at 5095.287 kb on + strand, within PP_4485 at 5095.288 kb on - strand, within PP_4485 at 5095.500 kb on + strand, within PP_4485 at 5095.501 kb on - strand, within PP_4485 at 5095.569 kb on + strand, within PP_4485 at 5095.627 kb on + strand, within PP_4485 at 5095.627 kb on + strand, within PP_4485 at 5095.628 kb on - strand, within PP_4485 at 5095.628 kb on - strand, within PP_4485 at 5095.628 kb on - strand, within PP_4485 at 5095.628 kb on - strand, within PP_4485 at 5095.629 kb on + strand, within PP_4485 at 5095.629 kb on + strand, within PP_4485 at 5095.629 kb on + strand, within PP_4485 at 5095.629 kb on + strand, within PP_4485 at 5095.630 kb on - strand, within PP_4485 at 5095.630 kb on - strand, within PP_4485 at 5095.630 kb on - strand, within PP_4485 at 5095.630 kb on - strand, within PP_4485 at 5095.630 kb on - strand, within PP_4485 at 5095.683 kb on + strand, within PP_4485 at 5095.684 kb on - strand, within PP_4485 at 5095.684 kb on - strand, within PP_4485 at 5095.718 kb on - strand, within PP_4485 at 5095.737 kb on + strand, within PP_4485 at 5095.737 kb on + strand, within PP_4485 at 5095.841 kb on + strand at 5095.841 kb on + strand at 5095.842 kb on - strand at 5095.908 kb on + strand at 5095.908 kb on + strand at 5095.981 kb on + strand at 5095.981 kb on + strand at 5095.982 kb on - strand at 5095.982 kb on - strand at 5095.999 kb on + strand at 5095.999 kb on + strand at 5095.999 kb on + strand at 5095.999 kb on + strand at 5095.999 kb on + strand at 5096.000 kb on - strand at 5096.000 kb on - strand at 5096.000 kb on - strand at 5096.000 kb on - strand at 5096.000 kb on - strand at 5096.000 kb on - strand at 5096.000 kb on - strand at 5096.018 kb on - strand at 5096.018 kb on - strand at 5096.018 kb on - strand at 5096.109 kb on + strand, within PP_4486 at 5096.118 kb on - strand, within PP_4486 at 5096.123 kb on + strand, within PP_4486 at 5096.163 kb on + strand, within PP_4486
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 5,093,509 + PP_4482 0.88 +2.2 5,093,509 + PP_4482 0.88 +1.1 5,093,509 + PP_4482 0.88 +2.5 5,093,621 + +2.2 5,093,621 + +2.0 5,093,621 + +0.9 5,093,622 - +1.8 5,093,622 - +2.7 5,093,622 - +2.5 5,093,622 - +1.9 5,093,626 + +2.5 5,093,696 + +2.2 5,093,721 + +0.4 5,093,722 - +0.4 5,093,876 + PP_4483 0.20 +2.4 5,093,877 - PP_4483 0.21 +3.0 5,094,037 + PP_4483 0.41 +2.6 5,094,037 + PP_4483 0.41 +3.1 5,094,037 + PP_4483 0.41 +3.2 5,094,037 + PP_4483 0.41 +2.8 5,094,037 + PP_4483 0.41 +3.0 5,094,037 + PP_4483 0.41 +2.9 5,094,037 + PP_4483 0.41 +3.8 5,094,037 + PP_4483 0.41 +3.3 5,094,038 - PP_4483 0.42 +2.8 5,094,038 - PP_4483 0.42 +2.8 5,094,038 - PP_4483 0.42 +2.5 5,094,087 + PP_4483 0.48 +2.1 5,094,088 - PP_4483 0.48 +2.8 5,094,088 - PP_4483 0.48 +2.8 5,094,480 + +0.8 5,094,481 - +1.7 5,094,481 - +2.9 5,094,592 + PP_4484 0.12 +3.1 5,094,592 + PP_4484 0.12 +3.3 5,094,593 - PP_4484 0.12 +3.5 5,094,593 - PP_4484 0.12 +3.1 5,094,593 - PP_4484 0.12 +3.0 5,094,593 - PP_4484 0.12 +3.6 5,094,611 + PP_4484 0.15 +3.0 5,094,611 + PP_4484 0.15 +3.1 5,094,611 + PP_4484 0.15 +3.0 5,094,611 + PP_4484 0.15 +3.1 5,094,611 + PP_4484 0.15 +2.8 5,094,611 + PP_4484 0.15 +1.5 5,094,612 - PP_4484 0.15 +3.6 5,094,613 + PP_4484 0.15 +2.4 5,094,613 + PP_4484 0.15 +3.3 5,094,613 + PP_4484 0.15 +2.2 5,094,614 - PP_4484 0.15 +2.8 5,094,631 + PP_4484 0.18 +1.7 5,094,631 + PP_4484 0.18 +3.1 5,094,631 + PP_4484 0.18 +2.6 5,094,632 - PP_4484 0.18 +3.2 5,094,632 - PP_4484 0.18 +2.2 5,094,634 + PP_4484 0.18 +3.3 5,094,635 - PP_4484 0.18 +3.2 5,094,635 - PP_4484 0.18 +3.0 5,094,734 - PP_4484 0.32 +2.8 5,094,781 + PP_4484 0.39 +2.9 5,094,874 + PP_4484 0.53 +1.7 5,094,874 + PP_4484 0.53 +3.2 5,094,874 + PP_4484 0.53 +3.2 5,094,874 + PP_4484 0.53 +2.9 5,094,884 + PP_4484 0.54 +3.8 5,094,885 - PP_4484 0.54 +2.4 5,094,917 + PP_4484 0.59 +2.5 5,094,917 + PP_4484 0.59 +2.9 5,094,917 + PP_4484 0.59 +2.8 5,094,918 - PP_4484 0.59 +2.3 5,094,918 - PP_4484 0.59 +2.8 5,094,918 - PP_4484 0.59 +3.3 5,094,944 + PP_4484 0.63 +3.1 5,094,944 + PP_4484 0.63 +3.2 5,094,982 + PP_4484 0.68 +3.0 5,094,983 - PP_4484 0.68 +3.4 5,094,983 - PP_4484 0.68 +3.3 5,095,027 + PP_4484 0.74 +2.8 5,095,027 + PP_4484 0.74 +2.9 5,095,027 + PP_4484 0.74 +3.2 5,095,027 + PP_4484 0.74 +2.9 5,095,027 + PP_4484 0.74 +3.2 5,095,028 - PP_4484 0.75 +2.7 5,095,028 - PP_4484 0.75 +3.9 5,095,028 - PP_4484 0.75 +2.6 5,095,028 - PP_4484 0.75 +2.8 5,095,033 + PP_4484 0.75 +3.5 5,095,033 + PP_4484 0.75 +2.8 5,095,033 + PP_4484 0.75 +3.7 5,095,034 - PP_4484 0.75 +2.3 5,095,034 - PP_4484 0.75 +3.1 5,095,034 - PP_4484 0.75 +2.2 5,095,163 - +3.3 5,095,193 - +1.8 5,095,205 + +2.8 5,095,205 + +3.0 5,095,206 - +4.2 5,095,249 - +3.3 5,095,249 - +1.7 5,095,249 - +2.9 5,095,287 + PP_4485 0.12 +3.3 5,095,287 + PP_4485 0.12 +3.1 5,095,287 + PP_4485 0.12 +1.5 5,095,288 - PP_4485 0.12 +2.7 5,095,500 + PP_4485 0.43 +3.0 5,095,501 - PP_4485 0.43 +3.5 5,095,569 + PP_4485 0.53 +2.5 5,095,627 + PP_4485 0.62 +2.7 5,095,627 + PP_4485 0.62 +2.8 5,095,628 - PP_4485 0.62 +3.3 5,095,628 - PP_4485 0.62 +3.0 5,095,628 - PP_4485 0.62 +2.9 5,095,628 - PP_4485 0.62 +3.1 5,095,629 + PP_4485 0.62 +2.7 5,095,629 + PP_4485 0.62 +3.5 5,095,629 + PP_4485 0.62 +2.7 5,095,629 + PP_4485 0.62 +3.2 5,095,630 - PP_4485 0.62 +3.1 5,095,630 - PP_4485 0.62 +2.5 5,095,630 - PP_4485 0.62 +2.8 5,095,630 - PP_4485 0.62 +3.6 5,095,630 - PP_4485 0.62 +3.0 5,095,683 + PP_4485 0.70 +4.1 5,095,684 - PP_4485 0.70 +3.2 5,095,684 - PP_4485 0.70 +2.1 5,095,718 - PP_4485 0.75 +2.5 5,095,737 + PP_4485 0.78 +2.6 5,095,737 + PP_4485 0.78 +3.3 5,095,841 + +3.5 5,095,841 + +2.2 5,095,842 - +2.1 5,095,908 + +2.9 5,095,908 + +2.1 5,095,981 + +2.9 5,095,981 + +2.7 5,095,982 - -0.3 5,095,982 - +1.2 5,095,999 + +2.6 5,095,999 + +2.8 5,095,999 + +3.4 5,095,999 + +2.4 5,095,999 + +3.6 5,096,000 - +0.7 5,096,000 - +0.5 5,096,000 - -0.2 5,096,000 - -0.5 5,096,000 - +2.2 5,096,000 - +1.9 5,096,000 - +2.0 5,096,018 - +2.9 5,096,018 - +2.2 5,096,018 - +3.0 5,096,109 + PP_4486 0.16 +2.8 5,096,118 - PP_4486 0.18 +4.0 5,096,123 + PP_4486 0.18 +2.9 5,096,163 + PP_4486 0.23 +2.6
Or see this region's nucleotide sequence