Strain Fitness in Pseudomonas putida KT2440 around PP_4483

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
5,092,733	+				+0.7
5,092,733	+				+1.3
5,092,733	+				+1.9
5,092,738	+				+2.1
5,092,852	+		PP_4482	0.22	+0.9
5,092,880	-		PP_4482	0.24	+2.4
5,092,892	+		PP_4482	0.26	+1.7
5,093,034	-		PP_4482	0.40	+2.7
5,093,034	-		PP_4482	0.40	+2.0
5,093,067	+		PP_4482	0.43	+1.9
5,093,302	+		PP_4482	0.67	+1.3
5,093,509	+		PP_4482	0.88	+2.2
5,093,509	+		PP_4482	0.88	+1.1
5,093,509	+		PP_4482	0.88	+2.5
5,093,621	+				+2.2
5,093,621	+				+2.0
5,093,621	+				+0.9
5,093,622	-				+1.8
5,093,622	-				+2.7
5,093,622	-				+2.5
5,093,622	-				+1.9
5,093,626	+				+2.5
5,093,696	+				+2.2
5,093,721	+				+0.4
5,093,722	-				+0.4
5,093,876	+		PP_4483	0.20	+2.4
5,093,877	-		PP_4483	0.21	+3.0
5,094,037	+		PP_4483	0.41	+2.6
5,094,037	+		PP_4483	0.41	+3.1
5,094,037	+		PP_4483	0.41	+3.2
5,094,037	+		PP_4483	0.41	+2.8
5,094,037	+		PP_4483	0.41	+3.0
5,094,037	+		PP_4483	0.41	+2.9
5,094,037	+		PP_4483	0.41	+3.8
5,094,037	+		PP_4483	0.41	+3.3
5,094,038	-		PP_4483	0.42	+2.8
5,094,038	-		PP_4483	0.42	+2.8
5,094,038	-		PP_4483	0.42	+2.5
5,094,087	+		PP_4483	0.48	+2.1
5,094,088	-		PP_4483	0.48	+2.8
5,094,088	-		PP_4483	0.48	+2.8
5,094,480	+				+0.8
5,094,481	-				+1.7
5,094,481	-				+2.9
5,094,592	+		PP_4484	0.12	+3.1
5,094,592	+		PP_4484	0.12	+3.3
5,094,593	-		PP_4484	0.12	+3.5
5,094,593	-		PP_4484	0.12	+3.1
5,094,593	-		PP_4484	0.12	+3.0
5,094,593	-		PP_4484	0.12	+3.6
5,094,611	+		PP_4484	0.15	+3.0
5,094,611	+		PP_4484	0.15	+3.1
5,094,611	+		PP_4484	0.15	+3.0
5,094,611	+		PP_4484	0.15	+3.1
5,094,611	+		PP_4484	0.15	+2.8
5,094,611	+		PP_4484	0.15	+1.5
5,094,612	-		PP_4484	0.15	+3.6
5,094,613	+		PP_4484	0.15	+2.4
5,094,613	+		PP_4484	0.15	+3.3
5,094,613	+		PP_4484	0.15	+2.2
5,094,614	-		PP_4484	0.15	+2.8
5,094,631	+		PP_4484	0.18	+1.7
5,094,631	+		PP_4484	0.18	+3.1
5,094,631	+		PP_4484	0.18	+2.6
5,094,632	-		PP_4484	0.18	+3.2
5,094,632	-		PP_4484	0.18	+2.2
5,094,634	+		PP_4484	0.18	+3.3
5,094,635	-		PP_4484	0.18	+3.2
5,094,635	-		PP_4484	0.18	+3.0
5,094,734	-		PP_4484	0.32	+2.8
5,094,781	+		PP_4484	0.39	+2.9
5,094,874	+		PP_4484	0.53	+1.7
5,094,874	+		PP_4484	0.53	+3.2
5,094,874	+		PP_4484	0.53	+3.2
5,094,874	+		PP_4484	0.53	+2.9
5,094,884	+		PP_4484	0.54	+3.8
5,094,885	-		PP_4484	0.54	+2.4
5,094,917	+		PP_4484	0.59	+2.5
5,094,917	+		PP_4484	0.59	+2.9
5,094,917	+		PP_4484	0.59	+2.8
5,094,918	-		PP_4484	0.59	+2.3
5,094,918	-		PP_4484	0.59	+2.8
5,094,918	-		PP_4484	0.59	+3.3
5,094,944	+		PP_4484	0.63	+3.1
5,094,944	+		PP_4484	0.63	+3.2
5,094,982	+		PP_4484	0.68	+3.0
5,094,983	-		PP_4484	0.68	+3.4
5,094,983	-		PP_4484	0.68	+3.3
5,095,027	+		PP_4484	0.74	+2.8
5,095,027	+		PP_4484	0.74	+2.9
5,095,027	+		PP_4484	0.74	+3.2
5,095,027	+		PP_4484	0.74	+2.9
5,095,027	+		PP_4484	0.74	+3.2
5,095,028	-		PP_4484	0.75	+2.7
5,095,028	-		PP_4484	0.75	+3.9
5,095,028	-		PP_4484	0.75	+2.6
5,095,028	-		PP_4484	0.75	+2.8
5,095,033	+		PP_4484	0.75	+3.5
5,095,033	+		PP_4484	0.75	+2.8
5,095,033	+		PP_4484	0.75	+3.7
5,095,034	-		PP_4484	0.75	+2.3
5,095,034	-		PP_4484	0.75	+3.1
5,095,034	-		PP_4484	0.75	+2.2
5,095,163	-				+3.3
5,095,193	-				+1.8
5,095,205	+				+2.8
5,095,205	+				+3.0
5,095,206	-				+4.2
5,095,249	-				+3.3
5,095,249	-				+1.7
5,095,249	-				+2.9
5,095,287	+		PP_4485	0.12	+3.3
5,095,287	+		PP_4485	0.12	+3.1
5,095,287	+		PP_4485	0.12	+1.5
5,095,288	-		PP_4485	0.12	+2.7