Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4382 and PP_4383 are separated by 11 nucleotides PP_4383 and PP_4384 are separated by 12 nucleotides PP_4384 and PP_4385 are separated by 36 nucleotides
PP_4382: PP_4382 - Peptidoglycan hydrolase FlgJ, at 4,975,616 to 4,976,770
_4382
PP_4383: PP_4383 - Flagellar P-ring protein, at 4,976,782 to 4,977,891
_4383
PP_4384: PP_4384 - Flagellar L-ring protein, at 4,977,904 to 4,978,599
_4384
PP_4385: PP_4385 - flagellar basal-body rod protein FlgG, at 4,978,636 to 4,979,421
_4385
Position (kb)
4976
4977
4978 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4975.782 kb on + strand, within PP_4382 at 4975.782 kb on + strand, within PP_4382 at 4975.807 kb on + strand, within PP_4382 at 4975.808 kb on - strand, within PP_4382 at 4975.833 kb on + strand, within PP_4382 at 4975.834 kb on - strand, within PP_4382 at 4975.842 kb on + strand, within PP_4382 at 4975.842 kb on + strand, within PP_4382 at 4975.843 kb on - strand, within PP_4382 at 4976.031 kb on + strand, within PP_4382 at 4976.429 kb on - strand, within PP_4382 at 4976.532 kb on + strand, within PP_4382 at 4976.532 kb on + strand, within PP_4382 at 4976.532 kb on + strand, within PP_4382 at 4976.532 kb on + strand, within PP_4382 at 4976.532 kb on + strand, within PP_4382 at 4976.533 kb on - strand, within PP_4382 at 4976.533 kb on - strand, within PP_4382 at 4976.533 kb on - strand, within PP_4382 at 4976.533 kb on - strand, within PP_4382 at 4976.544 kb on + strand, within PP_4382 at 4976.750 kb on + strand at 4977.093 kb on + strand, within PP_4383 at 4977.173 kb on + strand, within PP_4383 at 4977.173 kb on + strand, within PP_4383 at 4977.174 kb on - strand, within PP_4383 at 4977.546 kb on + strand, within PP_4383 at 4977.791 kb on - strand at 4977.791 kb on - strand at 4977.791 kb on - strand at 4977.791 kb on - strand at 4977.902 kb on - strand at 4977.986 kb on + strand, within PP_4384 at 4977.986 kb on + strand, within PP_4384 at 4977.986 kb on + strand, within PP_4384 at 4977.986 kb on + strand, within PP_4384 at 4977.987 kb on - strand, within PP_4384 at 4977.987 kb on - strand, within PP_4384 at 4977.987 kb on - strand, within PP_4384 at 4977.987 kb on - strand, within PP_4384 at 4978.141 kb on + strand, within PP_4384 at 4978.228 kb on - strand, within PP_4384 at 4978.230 kb on - strand, within PP_4384 at 4978.269 kb on + strand, within PP_4384 at 4978.269 kb on + strand, within PP_4384 at 4978.269 kb on + strand, within PP_4384 at 4978.269 kb on + strand, within PP_4384 at 4978.270 kb on - strand, within PP_4384 at 4978.424 kb on + strand, within PP_4384 at 4978.425 kb on - strand, within PP_4384 at 4978.452 kb on - strand, within PP_4384 at 4978.452 kb on - strand, within PP_4384 at 4978.452 kb on - strand, within PP_4384 at 4978.452 kb on - strand, within PP_4384 at 4978.508 kb on + strand, within PP_4384 at 4978.508 kb on + strand, within PP_4384 at 4978.509 kb on - strand, within PP_4384 at 4978.512 kb on - strand, within PP_4384 at 4978.606 kb on + strand at 4978.606 kb on + strand at 4978.606 kb on + strand at 4978.607 kb on - strand at 4978.607 kb on - strand at 4978.607 kb on - strand at 4978.637 kb on + strand at 4978.637 kb on + strand at 4978.637 kb on + strand at 4978.637 kb on + strand at 4978.637 kb on + strand at 4978.637 kb on + strand at 4978.638 kb on - strand at 4978.651 kb on - strand at 4978.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 4,975,782 + PP_4382 0.14 -4.0 4,975,782 + PP_4382 0.14 -2.9 4,975,807 + PP_4382 0.17 -1.8 4,975,808 - PP_4382 0.17 -2.4 4,975,833 + PP_4382 0.19 -2.6 4,975,834 - PP_4382 0.19 -2.6 4,975,842 + PP_4382 0.20 -2.7 4,975,842 + PP_4382 0.20 -2.8 4,975,843 - PP_4382 0.20 -2.7 4,976,031 + PP_4382 0.36 -3.0 4,976,429 - PP_4382 0.70 -1.1 4,976,532 + PP_4382 0.79 -1.9 4,976,532 + PP_4382 0.79 -3.0 4,976,532 + PP_4382 0.79 -2.9 4,976,532 + PP_4382 0.79 -1.1 4,976,532 + PP_4382 0.79 -3.4 4,976,533 - PP_4382 0.79 -1.7 4,976,533 - PP_4382 0.79 -0.5 4,976,533 - PP_4382 0.79 +0.6 4,976,533 - PP_4382 0.79 -2.8 4,976,544 + PP_4382 0.80 -1.6 4,976,750 + -1.2 4,977,093 + PP_4383 0.28 -4.3 4,977,173 + PP_4383 0.35 -4.2 4,977,173 + PP_4383 0.35 -2.0 4,977,174 - PP_4383 0.35 -2.1 4,977,546 + PP_4383 0.69 -0.4 4,977,791 - -3.5 4,977,791 - -0.8 4,977,791 - -0.4 4,977,791 - -3.5 4,977,902 - +0.5 4,977,986 + PP_4384 0.12 -2.0 4,977,986 + PP_4384 0.12 -2.5 4,977,986 + PP_4384 0.12 -3.3 4,977,986 + PP_4384 0.12 -2.0 4,977,987 - PP_4384 0.12 -1.0 4,977,987 - PP_4384 0.12 -1.6 4,977,987 - PP_4384 0.12 -2.8 4,977,987 - PP_4384 0.12 -3.8 4,978,141 + PP_4384 0.34 -0.7 4,978,228 - PP_4384 0.47 -4.5 4,978,230 - PP_4384 0.47 -1.1 4,978,269 + PP_4384 0.52 -3.1 4,978,269 + PP_4384 0.52 -2.5 4,978,269 + PP_4384 0.52 +0.8 4,978,269 + PP_4384 0.52 -4.1 4,978,270 - PP_4384 0.53 -1.9 4,978,424 + PP_4384 0.75 -2.6 4,978,425 - PP_4384 0.75 -3.6 4,978,452 - PP_4384 0.79 -2.7 4,978,452 - PP_4384 0.79 -2.3 4,978,452 - PP_4384 0.79 -2.7 4,978,452 - PP_4384 0.79 -2.7 4,978,508 + PP_4384 0.87 -2.2 4,978,508 + PP_4384 0.87 -1.9 4,978,509 - PP_4384 0.87 -2.2 4,978,512 - PP_4384 0.87 -1.5 4,978,606 + -3.2 4,978,606 + -1.7 4,978,606 + -2.7 4,978,607 - -1.3 4,978,607 - -0.0 4,978,607 - -3.2 4,978,637 + -1.1 4,978,637 + -2.8 4,978,637 + -0.3 4,978,637 + -1.2 4,978,637 + -3.2 4,978,637 + +0.4 4,978,638 - -1.0 4,978,651 - -1.9 4,978,703 + -1.2
Or see this region's nucleotide sequence