Strain Fitness in Pseudomonas putida KT2440 around PP_4383

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,975,782	+		PP_4382	0.14	-4.0
4,975,782	+		PP_4382	0.14	-2.9
4,975,807	+		PP_4382	0.17	-1.8
4,975,808	-		PP_4382	0.17	-2.4
4,975,833	+		PP_4382	0.19	-2.6
4,975,834	-		PP_4382	0.19	-2.6
4,975,842	+		PP_4382	0.20	-2.7
4,975,842	+		PP_4382	0.20	-2.8
4,975,843	-		PP_4382	0.20	-2.7
4,976,031	+		PP_4382	0.36	-3.0
4,976,429	-		PP_4382	0.70	-1.1
4,976,532	+		PP_4382	0.79	-1.9
4,976,532	+		PP_4382	0.79	-3.0
4,976,532	+		PP_4382	0.79	-2.9
4,976,532	+		PP_4382	0.79	-1.1
4,976,532	+		PP_4382	0.79	-3.4
4,976,533	-		PP_4382	0.79	-1.7
4,976,533	-		PP_4382	0.79	-0.5
4,976,533	-		PP_4382	0.79	+0.6
4,976,533	-		PP_4382	0.79	-2.8
4,976,544	+		PP_4382	0.80	-1.6
4,976,750	+				-1.2
4,977,093	+		PP_4383	0.28	-4.3
4,977,173	+		PP_4383	0.35	-4.2
4,977,173	+		PP_4383	0.35	-2.0
4,977,174	-		PP_4383	0.35	-2.1
4,977,546	+		PP_4383	0.69	-0.4
4,977,791	-				-3.5
4,977,791	-				-0.8
4,977,791	-				-0.4
4,977,791	-				-3.5
4,977,902	-				+0.5
4,977,986	+		PP_4384	0.12	-2.0
4,977,986	+		PP_4384	0.12	-2.5
4,977,986	+		PP_4384	0.12	-3.3
4,977,986	+		PP_4384	0.12	-2.0
4,977,987	-		PP_4384	0.12	-1.0
4,977,987	-		PP_4384	0.12	-1.6
4,977,987	-		PP_4384	0.12	-2.8
4,977,987	-		PP_4384	0.12	-3.8
4,978,141	+		PP_4384	0.34	-0.7
4,978,228	-		PP_4384	0.47	-4.5
4,978,230	-		PP_4384	0.47	-1.1
4,978,269	+		PP_4384	0.52	-3.1
4,978,269	+		PP_4384	0.52	-2.5
4,978,269	+		PP_4384	0.52	+0.8
4,978,269	+		PP_4384	0.52	-4.1
4,978,270	-		PP_4384	0.53	-1.9
4,978,424	+		PP_4384	0.75	-2.6
4,978,425	-		PP_4384	0.75	-3.6
4,978,452	-		PP_4384	0.79	-2.7
4,978,452	-		PP_4384	0.79	-2.3
4,978,452	-		PP_4384	0.79	-2.7
4,978,452	-		PP_4384	0.79	-2.7
4,978,508	+		PP_4384	0.87	-2.2
4,978,508	+		PP_4384	0.87	-1.9
4,978,509	-		PP_4384	0.87	-2.2
4,978,512	-		PP_4384	0.87	-1.5
4,978,606	+				-3.2
4,978,606	+				-1.7
4,978,606	+				-2.7
4,978,607	-				-1.3
4,978,607	-				-0.0
4,978,607	-				-3.2
4,978,637	+				-1.1
4,978,637	+				-2.8
4,978,637	+				-0.3
4,978,637	+				-1.2
4,978,637	+				-3.2
4,978,637	+				+0.4
4,978,638	-				-1.0
4,978,651	-				-1.9
4,978,703	+				-1.2