Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4381 and PP_4382 are separated by 12 nucleotides PP_4382 and PP_4383 are separated by 11 nucleotides
PP_4381: PP_4381 - Flagellar hook-associated protein FlgK, at 4,973,561 to 4,975,603
_4381
PP_4382: PP_4382 - Peptidoglycan hydrolase FlgJ, at 4,975,616 to 4,976,770
_4382
PP_4383: PP_4383 - Flagellar P-ring protein, at 4,976,782 to 4,977,891
_4383
Position (kb) 4975
4976
4977 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4974.688 kb on + strand, within PP_4381 at 4974.688 kb on + strand, within PP_4381 at 4974.828 kb on + strand, within PP_4381 at 4974.829 kb on - strand, within PP_4381 at 4974.829 kb on - strand, within PP_4381 at 4974.829 kb on - strand, within PP_4381 at 4974.931 kb on - strand, within PP_4381 at 4974.931 kb on - strand, within PP_4381 at 4974.939 kb on + strand, within PP_4381 at 4974.939 kb on + strand, within PP_4381 at 4974.940 kb on - strand, within PP_4381 at 4974.940 kb on - strand, within PP_4381 at 4974.940 kb on - strand, within PP_4381 at 4974.940 kb on - strand, within PP_4381 at 4974.940 kb on - strand, within PP_4381 at 4974.940 kb on - strand, within PP_4381 at 4974.971 kb on + strand, within PP_4381 at 4975.068 kb on + strand, within PP_4381 at 4975.069 kb on - strand, within PP_4381 at 4975.069 kb on - strand, within PP_4381 at 4975.396 kb on - strand, within PP_4381 at 4975.396 kb on - strand, within PP_4381 at 4975.396 kb on - strand, within PP_4381 at 4975.404 kb on + strand at 4975.404 kb on + strand at 4975.404 kb on + strand at 4975.405 kb on - strand at 4975.405 kb on - strand at 4975.405 kb on - strand at 4975.504 kb on - strand at 4975.534 kb on + strand at 4975.608 kb on + strand at 4975.608 kb on + strand at 4975.617 kb on + strand at 4975.619 kb on + strand at 4975.620 kb on - strand at 4975.620 kb on - strand at 4975.647 kb on + strand at 4975.648 kb on - strand at 4975.648 kb on - strand at 4975.717 kb on - strand at 4975.782 kb on + strand, within PP_4382 at 4975.782 kb on + strand, within PP_4382 at 4975.807 kb on + strand, within PP_4382 at 4975.808 kb on - strand, within PP_4382 at 4975.833 kb on + strand, within PP_4382 at 4975.834 kb on - strand, within PP_4382 at 4975.842 kb on + strand, within PP_4382 at 4975.842 kb on + strand, within PP_4382 at 4975.843 kb on - strand, within PP_4382 at 4976.031 kb on + strand, within PP_4382 at 4976.429 kb on - strand, within PP_4382 at 4976.532 kb on + strand, within PP_4382 at 4976.532 kb on + strand, within PP_4382 at 4976.532 kb on + strand, within PP_4382 at 4976.532 kb on + strand, within PP_4382 at 4976.532 kb on + strand, within PP_4382 at 4976.533 kb on - strand, within PP_4382 at 4976.533 kb on - strand, within PP_4382 at 4976.533 kb on - strand, within PP_4382 at 4976.533 kb on - strand, within PP_4382 at 4976.544 kb on + strand, within PP_4382 at 4976.750 kb on + strand at 4977.093 kb on + strand, within PP_4383 at 4977.173 kb on + strand, within PP_4383 at 4977.173 kb on + strand, within PP_4383 at 4977.174 kb on - strand, within PP_4383 at 4977.546 kb on + strand, within PP_4383
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 4,974,688 + PP_4381 0.55 -2.5 4,974,688 + PP_4381 0.55 -0.9 4,974,828 + PP_4381 0.62 -2.5 4,974,829 - PP_4381 0.62 -1.6 4,974,829 - PP_4381 0.62 -2.6 4,974,829 - PP_4381 0.62 -0.8 4,974,931 - PP_4381 0.67 -1.1 4,974,931 - PP_4381 0.67 -1.8 4,974,939 + PP_4381 0.67 -3.3 4,974,939 + PP_4381 0.67 -1.1 4,974,940 - PP_4381 0.67 -4.9 4,974,940 - PP_4381 0.67 -3.6 4,974,940 - PP_4381 0.67 -0.7 4,974,940 - PP_4381 0.67 -3.8 4,974,940 - PP_4381 0.67 -0.1 4,974,940 - PP_4381 0.67 -2.6 4,974,971 + PP_4381 0.69 -2.2 4,975,068 + PP_4381 0.74 -2.8 4,975,069 - PP_4381 0.74 -0.4 4,975,069 - PP_4381 0.74 -0.1 4,975,396 - PP_4381 0.90 -2.2 4,975,396 - PP_4381 0.90 -1.4 4,975,396 - PP_4381 0.90 -0.9 4,975,404 + +2.1 4,975,404 + -3.6 4,975,404 + -2.1 4,975,405 - -1.1 4,975,405 - -2.1 4,975,405 - +1.2 4,975,504 - -3.1 4,975,534 + +0.2 4,975,608 + -3.5 4,975,608 + -3.1 4,975,617 + -1.8 4,975,619 + -3.3 4,975,620 - -2.7 4,975,620 - +0.5 4,975,647 + -2.5 4,975,648 - -1.0 4,975,648 - -0.6 4,975,717 - -1.1 4,975,782 + PP_4382 0.14 -4.0 4,975,782 + PP_4382 0.14 -2.9 4,975,807 + PP_4382 0.17 -1.8 4,975,808 - PP_4382 0.17 -2.4 4,975,833 + PP_4382 0.19 -2.6 4,975,834 - PP_4382 0.19 -2.6 4,975,842 + PP_4382 0.20 -2.7 4,975,842 + PP_4382 0.20 -2.8 4,975,843 - PP_4382 0.20 -2.7 4,976,031 + PP_4382 0.36 -3.0 4,976,429 - PP_4382 0.70 -1.1 4,976,532 + PP_4382 0.79 -1.9 4,976,532 + PP_4382 0.79 -3.0 4,976,532 + PP_4382 0.79 -2.9 4,976,532 + PP_4382 0.79 -1.1 4,976,532 + PP_4382 0.79 -3.4 4,976,533 - PP_4382 0.79 -1.7 4,976,533 - PP_4382 0.79 -0.5 4,976,533 - PP_4382 0.79 +0.6 4,976,533 - PP_4382 0.79 -2.8 4,976,544 + PP_4382 0.80 -1.6 4,976,750 + -1.2 4,977,093 + PP_4383 0.28 -4.3 4,977,173 + PP_4383 0.35 -4.2 4,977,173 + PP_4383 0.35 -2.0 4,977,174 - PP_4383 0.35 -2.1 4,977,546 + PP_4383 0.69 -0.4
Or see this region's nucleotide sequence