Strain Fitness in Pseudomonas putida KT2440 around PP_4375

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,964,975	+		PP_4373	0.74	-0.2
4,964,975	+		PP_4373	0.74	-1.3
4,964,975	+				-0.1
4,964,976	-		PP_4373	0.74	-4.1
4,964,976	-		PP_4373	0.74	-1.4
4,965,026	+		PP_4373	0.78	-1.2
4,965,027	-		PP_4373	0.78	-2.1
4,965,027	-		PP_4373	0.78	-1.0
4,965,136	-		PP_4373	0.85	-1.4
4,965,148	-		PP_4373	0.86	-2.4
4,965,363	-				-0.8
4,965,363	-				-3.1
4,965,363	-				+0.2
4,965,363	-				-0.6
4,965,466	+				-1.6
4,965,466	+				-1.5
4,965,466	+				-1.3
4,965,466	+				-0.8
4,965,467	-				-0.5
4,965,481	-				-1.2
4,965,544	+				-1.9
4,965,544	+				-1.5
4,965,544	+				-2.5
4,965,544	+				-1.7
4,965,544	+				-1.5
4,965,545	-				-2.1
4,965,545	-				-2.9
4,965,545	-				-3.1
4,965,545	-				+0.2
4,965,546	+				-2.2
4,965,546	+				-0.6
4,965,547	-				-2.3
4,965,547	-				-0.9
4,965,547	-				-2.5
4,965,575	+		PP_4374	0.16	-1.0
4,965,703	-		PP_4374	0.60	-1.6
4,965,832	+				-1.8
4,965,833	+				-3.0
4,965,834	-				-0.4
4,965,838	+				+0.1
4,965,841	+				-2.9
4,965,841	+				+0.8
4,965,841	+				-2.6
4,965,841	+				-0.8
4,965,841	+				-1.6
4,965,842	-				+0.3
4,965,927	-		PP_4375	0.22	-3.1
4,965,961	+		PP_4375	0.31	-2.7
4,965,961	+		PP_4375	0.31	-2.3
4,965,961	+		PP_4375	0.31	-0.8
4,965,961	+		PP_4375	0.31	-1.2
4,965,961	+		PP_4375	0.31	-2.0
4,965,962	-		PP_4375	0.31	-3.6
4,965,962	-		PP_4375	0.31	-1.8
4,965,962	-		PP_4375	0.31	-2.2
4,965,967	+		PP_4375	0.32	-2.1
4,965,967	+		PP_4375	0.32	-1.8
4,966,041	+		PP_4375	0.51	-1.4
4,966,041	+		PP_4375	0.51	+0.3
4,966,041	+		PP_4375	0.51	-2.8
4,966,041	+		PP_4375	0.51	-1.2
4,966,041	+		PP_4375	0.51	-2.0
4,966,041	+		PP_4375	0.51	-4.0
4,966,041	+		PP_4375	0.51	-1.4
4,966,041	+		PP_4375	0.51	-3.2
4,966,042	-		PP_4375	0.51	+0.4
4,966,042	-		PP_4375	0.51	-3.0
4,966,042	-		PP_4375	0.51	-2.5
4,966,042	-		PP_4375	0.51	-1.3
4,966,042	-		PP_4375	0.51	+0.0
4,966,042	-		PP_4375	0.51	-2.3
4,966,042	-		PP_4375	0.51	-2.5
4,966,042	-		PP_4375	0.51	-2.3
4,966,043	+		PP_4375	0.51	-0.6
4,966,043	+		PP_4375	0.51	-2.6
4,966,044	-		PP_4375	0.52	-0.2
4,966,044	-		PP_4375	0.52	-2.4
4,966,044	-		PP_4375	0.52	-2.5
4,966,044	-		PP_4375	0.52	-2.1
4,966,044	-		PP_4375	0.52	-3.3
4,966,068	+		PP_4375	0.58	-2.9
4,966,068	+		PP_4375	0.58	-1.5
4,966,068	+		PP_4375	0.58	-2.6
4,966,068	+		PP_4375	0.58	-2.7
4,966,068	+		PP_4375	0.58	-3.1
4,966,069	-		PP_4375	0.58	-3.9
4,966,069	-		PP_4375	0.58	-1.8
4,966,069	-		PP_4375	0.58	-0.5
4,966,260	-				-3.7
4,966,270	+				-0.6
4,966,270	+				-1.5
4,966,270	+				-2.5
4,966,270	+				-0.8
4,966,270	+				-1.0
4,966,270	+				-2.3
4,966,274	+				-2.6
4,966,274	+				-3.4
4,966,274	+				-1.4
4,966,274	+				-3.0
4,966,275	-				+1.3
4,966,275	-				+0.2
4,966,278	+				-1.8
4,966,278	+				-2.9
4,966,278	+				-2.0
4,966,278	+				-2.7
4,966,278	+				-2.4
4,966,278	+				-2.2
4,966,279	-				-0.6
4,966,279	-				-1.1
4,966,279	-				-4.3
4,966,311	-				-0.9
4,966,311	-				+1.1
4,966,415	+				+0.5
4,966,415	+				-3.6
4,966,415	+				-2.8
4,966,416	-				-0.7
4,966,416	-				-1.1
4,966,449	+				+0.6
4,966,449	+				-1.6
4,966,450	-				-1.7
4,966,487	+		PP_4376	0.12	-2.4
4,966,489	+		PP_4376	0.13	-0.2
4,966,489	+		PP_4376	0.13	-1.0
4,966,544	+		PP_4376	0.17	-3.0
4,966,544	+		PP_4376	0.17	-2.2
4,966,544	+		PP_4376	0.17	-1.5
4,966,545	-		PP_4376	0.17	-2.1
4,966,545	-		PP_4376	0.17	-3.4
4,966,545	-		PP_4376	0.17	-2.8
4,966,545	-		PP_4376	0.17	-2.3
4,966,683	+		PP_4376	0.27	-2.6
4,966,806	+		PP_4376	0.36	-2.0
4,966,807	-		PP_4376	0.36	-1.7
4,966,807	-		PP_4376	0.36	-1.4
4,966,871	+		PP_4376	0.41	-3.0
4,966,872	-		PP_4376	0.41	-1.2
4,966,872	-		PP_4376	0.41	-2.0
4,966,872	-		PP_4376	0.41	-4.1
4,966,908	+		PP_4376	0.43	-1.1
4,966,909	-		PP_4376	0.43	-3.6
4,966,909	-		PP_4376	0.43	+0.7
4,966,914	+		PP_4376	0.44	-1.5
4,966,915	-		PP_4376	0.44	-1.5
4,966,915	-		PP_4376	0.44	-1.7
4,966,915	-		PP_4376	0.44	-3.0
4,966,915	-		PP_4376	0.44	-2.7
4,966,942	-		PP_4376	0.46	-0.4
4,966,942	-		PP_4376	0.46	-3.3
4,966,951	+		PP_4376	0.47	+0.7
4,966,951	+		PP_4376	0.47	-1.0
4,966,952	-		PP_4376	0.47	-3.5
4,966,992	+		PP_4376	0.50	-2.0
4,966,993	-		PP_4376	0.50	+0.0
4,966,993	-		PP_4376	0.50	-3.1
4,966,993	-		PP_4376	0.50	-3.0
4,966,995	+				-0.6
4,966,996	-		PP_4376	0.50	-2.2
4,966,996	-		PP_4376	0.50	-3.2
4,967,030	+		PP_4376	0.52	-2.4
4,967,098	-		PP_4376	0.57	-0.3
4,967,134	+		PP_4376	0.60	-2.6
4,967,134	+		PP_4376	0.60	-3.1
4,967,199	+		PP_4376	0.65	-1.9