Strain Fitness in Pseudomonas putida KT2440 around PP_4359

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,949,357	+				-2.2
4,949,357	+				-2.4
4,949,358	-				+0.1
4,949,358	-				-0.6
4,949,358	-				+0.3
4,949,811	+		PP_4358	0.45	-0.7
4,949,812	-		PP_4358	0.45	-2.3
4,950,055	-		PP_4358	0.70	-0.1
4,950,055	-		PP_4358	0.70	-2.2
4,950,055	-		PP_4358	0.70	-3.5
4,950,069	+		PP_4358	0.72	-2.8
4,950,069	+		PP_4358	0.72	-2.3
4,950,069	+		PP_4358	0.72	-2.6
4,950,070	-		PP_4358	0.72	-1.0
4,950,151	+		PP_4358	0.80	-1.7
4,950,152	-		PP_4358	0.80	-1.1
4,950,153	+		PP_4358	0.80	-1.9
4,950,154	-		PP_4358	0.80	-2.6
4,950,208	+		PP_4358	0.86	-2.2
4,950,335	+				-2.3
4,950,337	-				+1.2
4,950,354	+				-1.7
4,950,354	+				-3.7
4,950,355	-				-2.5
4,950,355	-				+0.4
4,950,355	-				-2.2
4,950,355	-				+0.8
4,950,362	+				-2.5
4,950,584	+		PP_4359	0.46	-1.8
4,950,584	+		PP_4359	0.46	-1.1
4,950,584	+		PP_4359	0.46	-1.8
4,950,585	-		PP_4359	0.47	-0.5
4,950,585	-		PP_4359	0.47	+0.3
4,950,585	-		PP_4359	0.47	+0.3
4,950,592	+		PP_4359	0.48	-2.5
4,950,592	+		PP_4359	0.48	-2.3
4,950,606	+		PP_4359	0.51	-4.0
4,950,606	+		PP_4359	0.51	-2.7
4,950,607	-		PP_4359	0.51	+0.8
4,950,663	+		PP_4359	0.62	-2.9
4,950,663	+		PP_4359	0.62	-3.6
4,950,663	+		PP_4359	0.62	-3.8
4,950,663	+		PP_4359	0.62	-2.6
4,950,663	+		PP_4359	0.62	-0.7
4,950,663	+		PP_4359	0.62	-3.7
4,950,664	-		PP_4359	0.62	+0.0
4,950,664	-		PP_4359	0.62	-0.8
4,950,664	-		PP_4359	0.62	-2.0
4,950,664	-		PP_4359	0.62	-0.9
4,950,665	+		PP_4359	0.63	-0.4
4,950,743	-		PP_4359	0.78	-0.2
4,950,814	+				-3.3
4,950,856	+				-2.1
4,950,857	-				-1.8
4,950,857	-				-0.0
4,950,911	-				-0.6
4,951,006	-				-0.3
4,951,006	-				+0.4
4,951,014	+				-0.6
4,951,014	+				-2.3
4,951,014	+				-3.2
4,951,014	+				-1.6
4,951,014	+				-1.2
4,951,015	-				-0.5
4,951,015	-				-0.8
4,951,015	-				-3.9
4,951,392	+		PP_4361	0.30	-2.5
4,951,392	+		PP_4361	0.30	-2.4
4,951,392	+		PP_4361	0.30	-2.0
4,951,392	+		PP_4361	0.30	-2.6
4,951,393	-		PP_4361	0.30	-2.8
4,951,393	-		PP_4361	0.30	-3.6
4,951,393	-		PP_4361	0.30	-1.0
4,951,640	-		PP_4361	0.50	-4.4
4,951,663	+		PP_4361	0.52	-3.9
4,951,663	+		PP_4361	0.52	-2.6
4,951,664	-		PP_4361	0.52	-1.5