Strain Fitness in Pseudomonas putida KT2440 around PP_4126

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,664,313	+				+5.6
4,664,314	-		PP_4125	0.46	+3.1
4,664,574	+		PP_4125	0.72	+3.7
4,664,574	+		PP_4125	0.72	+2.9
4,664,574	+		PP_4125	0.72	+2.3
4,664,575	-		PP_4125	0.72	+4.0
4,664,826	+				+1.2
4,664,826	+				+0.2
4,664,826	+				+0.6
4,664,876	+				+3.6
4,664,876	+				+3.4
4,664,876	+				+2.3
4,664,877	-				+2.3
4,664,893	+				+5.6
4,664,894	-				+3.7
4,665,054	+		PP_4126	0.34	+3.4
4,665,266	+		PP_4126	0.73	+2.6
4,665,266	+		PP_4126	0.73	+3.7
4,665,323	+		PP_4126	0.83	+4.7
4,665,323	+				+5.7
4,665,324	-		PP_4126	0.83	+3.1
4,665,324	-		PP_4126	0.83	+4.5
4,665,441	+				+5.2
4,665,441	+				+3.9
4,665,484	+		PP_4127	0.12	+4.5
4,665,750	+		PP_4127	0.65	+1.2
4,665,750	+		PP_4127	0.65	+3.9
4,665,751	-		PP_4127	0.65	+4.8
4,665,924	+				+2.7
4,666,373	+				+3.7
4,666,373	+				+3.4
4,666,374	-				+5.4
4,666,374	-				+3.0