Strain Fitness in Pseudomonas putida KT2440 around PP_4053

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,569,311	+		PP_4052	0.60	+0.0
4,569,312	-		PP_4052	0.60	-2.5
4,569,312	-		PP_4052	0.60	+0.7
4,569,494	-		PP_4052	0.69	+0.2
4,569,510	-		PP_4052	0.70	-2.2
4,569,510	-		PP_4052	0.70	-2.1
4,569,874	+		PP_4052	0.87	-1.0
4,569,874	+		PP_4052	0.87	-0.5
4,570,052	+				+0.1
4,570,062	-				+0.1
4,570,202	-				+0.6
4,570,246	-				-0.4
4,570,246	-				-0.5
4,570,246	-				-0.4
4,570,290	+				+1.3
4,570,291	-				-0.1
4,570,291	-				-0.7
4,570,307	+				+0.0
4,570,420	+		PP_4053	0.10	-0.8
4,570,421	-		PP_4053	0.10	+0.3
4,570,480	-		PP_4053	0.12	+0.5
4,570,563	+		PP_4053	0.15	-2.4
4,570,591	+		PP_4053	0.16	+1.3
4,570,592	-		PP_4053	0.16	-2.3
4,570,638	+		PP_4053	0.18	-0.5
4,571,100	+		PP_4053	0.35	+0.8
4,571,129	+		PP_4053	0.36	-0.7
4,571,130	-		PP_4053	0.36	+0.2
4,571,182	-		PP_4053	0.38	-1.6
4,571,182	-		PP_4053	0.38	-3.1
4,571,182	-		PP_4053	0.38	-1.2
4,571,231	+		PP_4053	0.39	+1.6
4,571,532	+		PP_4053	0.50	+0.1
4,571,532	+		PP_4053	0.50	-0.3
4,571,532	+		PP_4053	0.50	+1.0
4,571,959	+		PP_4053	0.66	+1.3
4,571,959	+		PP_4053	0.66	-0.8
4,571,995	+		PP_4053	0.67	-0.4
4,572,207	-		PP_4053	0.75	-0.0
4,572,231	+		PP_4053	0.75	+1.2
4,572,253	-		PP_4053	0.76	-0.9
4,572,399	+		PP_4053	0.82	+0.9
4,572,414	+		PP_4053	0.82	-0.1
4,572,415	-		PP_4053	0.82	-1.7
4,572,462	+		PP_4053	0.84	-0.9
4,572,463	-		PP_4053	0.84	+0.0
4,572,609	+				+0.2
4,572,610	-		PP_4053	0.89	-0.2
4,572,610	-		PP_4053	0.89	-0.1
4,572,625	+		PP_4053	0.90	-0.8
4,572,734	+				+0.6
4,572,778	+				+0.3
4,572,779	-				-1.4
4,572,898	+				+0.5
4,572,899	-				-0.0
4,572,899	-				-0.9
4,572,966	-		PP_4054	0.20	+0.6
4,572,989	-		PP_4054	0.28	+0.3
4,573,180	+				-1.1
4,573,181	-				-1.4
4,573,228	+				+1.2
4,573,228	+				+0.4
4,573,228	+				+0.5
4,573,228	+				+1.0
4,573,252	-				+1.0
4,573,252	-				-1.2
4,573,252	-				-1.2
4,573,513	+				+1.1
4,573,514	-				-0.4
4,573,514	-				-2.4
4,573,542	+				-1.6
4,573,542	+				-0.8
4,573,543	-				-1.2
4,573,551	+		PP_4055	0.10	-0.3
4,573,552	-		PP_4055	0.10	-0.3
4,573,581	+		PP_4055	0.12	-0.9
4,573,581	+				+0.9
4,573,581	+		PP_4055	0.12	-0.1
4,573,581	+		PP_4055	0.12	+1.4
4,573,581	+		PP_4055	0.12	+0.1
4,573,581	+		PP_4055	0.12	-1.3
4,573,582	-		PP_4055	0.12	-2.3
4,573,582	-		PP_4055	0.12	+0.1
4,573,596	+		PP_4055	0.12	-0.6
4,573,596	+		PP_4055	0.12	+0.6
4,573,596	+		PP_4055	0.12	-0.8
4,573,597	-		PP_4055	0.12	+0.3
4,573,597	-		PP_4055	0.12	+1.0
4,573,597	-		PP_4055	0.12	-0.5
4,573,597	-				-0.6
4,573,597	-		PP_4055	0.12	-0.4
4,573,605	+		PP_4055	0.13	-0.9
4,573,605	+		PP_4055	0.13	-0.7
4,573,659	+		PP_4055	0.15	-0.7
4,573,660	-		PP_4055	0.15	-0.4
4,573,711	-		PP_4055	0.18	-0.7
4,573,787	+		PP_4055	0.21	-0.8
4,573,854	+		PP_4055	0.24	-0.1
4,573,854	+		PP_4055	0.24	+0.5
4,573,854	+		PP_4055	0.24	-1.7
4,573,855	-		PP_4055	0.24	-2.9
4,573,855	-		PP_4055	0.24	-1.4
4,573,855	-		PP_4055	0.24	-2.2
4,573,855	-		PP_4055	0.24	-0.5