Strain Fitness in Pseudomonas putida KT2440 around PP_4006

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,515,175	+				-0.4
4,515,286	+				-2.3
4,515,393	+				+1.7
4,515,543	+		PP_4005	0.21	-2.4
4,515,544	-		PP_4005	0.21	+0.8
4,515,759	+		PP_4005	0.53	-1.0
4,515,834	+		PP_4005	0.64	+0.4
4,515,834	+		PP_4005	0.64	-2.1
4,516,029	+				-2.2
4,516,092	-				-1.3
4,516,092	-				+0.6
4,516,100	+				-0.7
4,516,100	+				-0.0
4,516,101	-				+0.6
4,516,101	-				-0.0
4,516,163	+				-1.0
4,516,164	-				-1.1
4,516,164	-				-0.8
4,516,164	-				+0.0
4,516,256	+		PP_4006	0.17	+0.2
4,516,392	+		PP_4006	0.36	-0.3
4,516,403	-		PP_4006	0.38	-2.5
4,516,403	-		PP_4006	0.38	-1.3
4,516,451	+		PP_4006	0.44	-0.7
4,516,451	+		PP_4006	0.44	-1.2
4,516,452	-		PP_4006	0.45	-1.2
4,516,473	-		PP_4006	0.48	-3.3
4,516,473	-		PP_4006	0.48	-1.2
4,516,473	-		PP_4006	0.48	-1.1
4,516,475	-		PP_4006	0.48	-1.4
4,516,475	-		PP_4006	0.48	-3.1
4,516,505	+		PP_4006	0.52	-2.8
4,516,505	+		PP_4006	0.52	-1.1
4,516,505	+		PP_4006	0.52	-3.2
4,516,505	+		PP_4006	0.52	-0.7
4,516,505	+		PP_4006	0.52	-2.2
4,516,506	-		PP_4006	0.52	-0.6
4,516,506	-		PP_4006	0.52	-2.1
4,516,506	-		PP_4006	0.52	-1.5
4,516,506	-		PP_4006	0.52	-2.1
4,516,542	+		PP_4006	0.57	-0.2
4,516,568	+		PP_4006	0.61	-1.3
4,516,643	+		PP_4006	0.72	-0.2
4,516,643	+		PP_4006	0.72	-1.9
4,516,644	-		PP_4006	0.72	-3.3
4,516,652	+		PP_4006	0.73	-1.4
4,516,652	+		PP_4006	0.73	-0.6
4,516,781	+				-1.2
4,516,781	+				-1.1
4,516,781	+				-1.6
4,516,782	-				-2.9
4,516,782	-				-3.4
4,516,782	-				-0.4
4,516,782	-				-2.8
4,516,815	+				-1.1
4,516,875	+				-1.6
4,517,425	-				-1.4
4,517,650	+		PP_4008	0.18	-2.1
4,517,650	+		PP_4008	0.18	-3.4
4,517,651	-		PP_4008	0.18	-1.6
4,517,716	+		PP_4008	0.21	-1.5
4,517,828	+		PP_4008	0.25	-3.9
4,517,829	-		PP_4008	0.26	-3.8
4,517,829	-		PP_4008	0.26	-0.5
4,517,829	-		PP_4008	0.26	-2.2