Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3901 and PP_3902 are separated by 118 nucleotides PP_3902 and PP_3903 overlap by 11 nucleotides PP_3903 and PP_3904 are separated by 205 nucleotides PP_3904 and PP_3905 are separated by 8 nucleotides PP_3905 and PP_3906 are separated by 19 nucleotides PP_3906 and PP_3907 overlap by 4 nucleotides
PP_3901: PP_3901 - conserved protein of unknown function, at 4,415,798 to 4,416,058
_3901
PP_3902: PP_3902 - conserved protein of unknown function, at 4,416,177 to 4,416,485
_3902
PP_3903: PP_3903 - conserved protein of unknown function, at 4,416,475 to 4,416,639
_3903
PP_3904: PP_3904 - conserved protein of unknown function, at 4,416,845 to 4,417,099
_3904
PP_3905: PP_3905 - Transcriptional regulator, LuxR family, at 4,417,108 to 4,417,659
_3905
PP_3906: PP_3906 - conserved protein of unknown function, at 4,417,679 to 4,417,948
_3906
PP_3907: PP_3907 - conserved protein of unknown function, at 4,417,945 to 4,418,403
_3907
Position (kb) 4416
4417
4418 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4415.924 kb on + strand, within PP_3901 at 4415.924 kb on + strand, within PP_3901 at 4415.924 kb on + strand, within PP_3901 at 4415.925 kb on - strand, within PP_3901 at 4415.925 kb on - strand, within PP_3901 at 4415.994 kb on + strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4416.049 kb on - strand at 4416.107 kb on + strand at 4416.126 kb on + strand at 4416.433 kb on + strand, within PP_3902 at 4416.433 kb on + strand, within PP_3902 at 4416.433 kb on + strand, within PP_3902 at 4416.434 kb on - strand, within PP_3902 at 4416.434 kb on - strand, within PP_3902 at 4416.518 kb on + strand, within PP_3903 at 4416.518 kb on + strand, within PP_3903 at 4416.519 kb on - strand, within PP_3903 at 4416.551 kb on + strand, within PP_3903 at 4416.637 kb on + strand at 4416.650 kb on + strand at 4416.706 kb on - strand at 4416.717 kb on + strand at 4416.718 kb on - strand at 4416.745 kb on + strand at 4416.776 kb on + strand at 4416.777 kb on - strand at 4416.777 kb on - strand at 4416.777 kb on - strand at 4416.847 kb on - strand at 4416.878 kb on - strand, within PP_3904 at 4416.891 kb on - strand, within PP_3904 at 4417.001 kb on - strand, within PP_3904 at 4417.078 kb on + strand at 4417.094 kb on + strand at 4417.095 kb on - strand at 4417.113 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.135 kb on - strand at 4417.358 kb on + strand, within PP_3905 at 4417.648 kb on + strand at 4417.649 kb on - strand at 4417.877 kb on + strand, within PP_3906 at 4417.878 kb on - strand, within PP_3906 at 4417.878 kb on - strand, within PP_3906 at 4417.878 kb on - strand, within PP_3906 at 4418.093 kb on + strand, within PP_3907 at 4418.093 kb on + strand, within PP_3907 at 4418.093 kb on + strand, within PP_3907 at 4418.094 kb on - strand, within PP_3907 at 4418.094 kb on - strand, within PP_3907
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 4,415,924 + PP_3901 0.48 -1.2 4,415,924 + PP_3901 0.48 +0.4 4,415,924 + PP_3901 0.48 +0.4 4,415,925 - PP_3901 0.49 +2.7 4,415,925 - PP_3901 0.49 +0.5 4,415,994 + PP_3901 0.75 +0.3 4,415,995 - PP_3901 0.75 +0.4 4,415,995 - PP_3901 0.75 +0.5 4,415,995 - PP_3901 0.75 -0.1 4,415,995 - PP_3901 0.75 +0.6 4,416,049 - -1.4 4,416,107 + -3.2 4,416,126 + -2.1 4,416,433 + PP_3902 0.83 -2.0 4,416,433 + PP_3902 0.83 -0.9 4,416,433 + PP_3902 0.83 -0.9 4,416,434 - PP_3902 0.83 -0.9 4,416,434 - PP_3902 0.83 -1.0 4,416,518 + PP_3903 0.26 -0.3 4,416,518 + PP_3903 0.26 -2.9 4,416,519 - PP_3903 0.27 -0.3 4,416,551 + PP_3903 0.46 -1.8 4,416,637 + -0.8 4,416,650 + -1.7 4,416,706 - +1.0 4,416,717 + +0.1 4,416,718 - -1.5 4,416,745 + -3.1 4,416,776 + -2.1 4,416,777 - -0.7 4,416,777 - +0.1 4,416,777 - +0.1 4,416,847 - -0.2 4,416,878 - PP_3904 0.13 +1.9 4,416,891 - PP_3904 0.18 +0.6 4,417,001 - PP_3904 0.61 -0.8 4,417,078 + -0.7 4,417,094 + +0.8 4,417,095 - +0.2 4,417,113 + +0.1 4,417,134 + -1.9 4,417,134 + +0.2 4,417,134 + -0.1 4,417,134 + -0.2 4,417,135 - +1.1 4,417,358 + PP_3905 0.45 -2.8 4,417,648 + -1.7 4,417,649 - +0.1 4,417,877 + PP_3906 0.73 -0.5 4,417,878 - PP_3906 0.74 -0.6 4,417,878 - PP_3906 0.74 +0.3 4,417,878 - PP_3906 0.74 +1.1 4,418,093 + PP_3907 0.32 -0.2 4,418,093 + PP_3907 0.32 +0.4 4,418,093 + PP_3907 0.32 +0.3 4,418,094 - PP_3907 0.32 +0.6 4,418,094 - PP_3907 0.32 -0.3
Or see this region's nucleotide sequence