Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3729 and PP_3730 overlap by 4 nucleotides PP_3730 and PP_3731 are separated by 73 nucleotides PP_3731 and PP_3732 are separated by 116 nucleotides PP_3732 and PP_3733 are separated by 53 nucleotides
PP_3729: PP_3729 - Periplasmic amino acid-binding protein-related protein, at 4,256,124 to 4,256,906
_3729
PP_3730: PP_3730 - Transcriptional regulatory protein AruR, at 4,256,903 to 4,257,619
_3730
PP_3731: PP_3731 - Transcriptional regulator, TetR family, at 4,257,693 to 4,258,337
_3731
PP_3732: PP_3732 - Enoyl-CoA hydratase/isomerase family protein, at 4,258,454 to 4,259,200
_3732
PP_3733: PP_3733 - putative ABC transporter lipoprotein, at 4,259,254 to 4,260,312
_3733
Position (kb) 4257
4258
4259 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4256.932 kb on - strand at 4256.932 kb on - strand at 4257.325 kb on - strand at 4257.366 kb on + strand, within PP_3730 at 4257.533 kb on + strand at 4257.534 kb on - strand, within PP_3730 at 4257.558 kb on + strand at 4257.559 kb on - strand at 4257.559 kb on - strand at 4257.651 kb on + strand at 4257.652 kb on - strand at 4257.652 kb on - strand at 4257.652 kb on - strand at 4257.652 kb on - strand at 4257.672 kb on + strand at 4257.673 kb on - strand at 4257.673 kb on - strand at 4257.906 kb on + strand, within PP_3731 at 4257.929 kb on - strand, within PP_3731 at 4257.938 kb on - strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.141 kb on + strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.142 kb on - strand, within PP_3731 at 4258.174 kb on + strand, within PP_3731 at 4258.318 kb on + strand at 4258.375 kb on + strand at 4258.398 kb on - strand at 4258.404 kb on + strand at 4258.405 kb on - strand at 4258.405 kb on - strand at 4258.547 kb on + strand, within PP_3732 at 4258.547 kb on + strand, within PP_3732 at 4258.547 kb on + strand, within PP_3732 at 4258.548 kb on - strand, within PP_3732 at 4258.548 kb on - strand, within PP_3732 at 4258.548 kb on - strand, within PP_3732 at 4258.548 kb on - strand, within PP_3732 at 4258.548 kb on - strand, within PP_3732 at 4259.065 kb on + strand, within PP_3732 at 4259.219 kb on + strand at 4259.219 kb on + strand at 4259.219 kb on + strand at 4259.255 kb on + strand at 4259.255 kb on + strand at 4259.255 kb on + strand at 4259.255 kb on + strand at 4259.256 kb on - strand at 4259.258 kb on + strand at 4259.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 4,256,932 - +0.0 4,256,932 - +0.3 4,257,325 - -0.1 4,257,366 + PP_3730 0.65 +0.7 4,257,533 + +0.5 4,257,534 - PP_3730 0.88 -0.2 4,257,558 + +0.3 4,257,559 - -0.1 4,257,559 - +0.3 4,257,651 + +0.2 4,257,652 - +1.6 4,257,652 - +2.2 4,257,652 - +2.5 4,257,652 - +1.4 4,257,672 + +0.4 4,257,673 - +2.8 4,257,673 - +0.2 4,257,906 + PP_3731 0.33 +3.1 4,257,929 - PP_3731 0.37 +3.4 4,257,938 - PP_3731 0.38 +2.5 4,258,141 + PP_3731 0.69 +2.9 4,258,141 + PP_3731 0.69 +3.0 4,258,141 + PP_3731 0.69 +2.7 4,258,141 + PP_3731 0.69 +2.6 4,258,141 + PP_3731 0.69 +3.0 4,258,141 + PP_3731 0.69 +2.2 4,258,141 + PP_3731 0.69 +2.9 4,258,141 + PP_3731 0.69 +2.8 4,258,141 + PP_3731 0.69 +2.9 4,258,141 + PP_3731 0.69 +2.5 4,258,142 - PP_3731 0.70 +3.4 4,258,142 - PP_3731 0.70 +2.9 4,258,142 - PP_3731 0.70 +3.6 4,258,142 - PP_3731 0.70 +3.5 4,258,142 - PP_3731 0.70 +3.8 4,258,142 - PP_3731 0.70 +4.1 4,258,142 - PP_3731 0.70 +4.3 4,258,142 - PP_3731 0.70 +3.2 4,258,174 + PP_3731 0.75 +2.2 4,258,318 + +2.0 4,258,375 + +1.0 4,258,398 - -0.2 4,258,404 + +0.7 4,258,405 - -3.5 4,258,405 - +1.5 4,258,547 + PP_3732 0.12 +1.6 4,258,547 + PP_3732 0.12 +0.4 4,258,547 + PP_3732 0.12 +0.1 4,258,548 - PP_3732 0.13 -0.9 4,258,548 - PP_3732 0.13 -1.0 4,258,548 - PP_3732 0.13 +0.3 4,258,548 - PP_3732 0.13 -1.4 4,258,548 - PP_3732 0.13 +0.1 4,259,065 + PP_3732 0.82 +0.9 4,259,219 + +0.9 4,259,219 + -1.1 4,259,219 + +0.2 4,259,255 + -0.4 4,259,255 + +0.7 4,259,255 + +1.5 4,259,255 + -0.3 4,259,256 - -0.0 4,259,258 + -0.4 4,259,277 - +1.0
Or see this region's nucleotide sequence