Strain Fitness in Pseudomonas putida KT2440 around PP_3608

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
4,099,240	+		PP_3607	0.36	-0.2
4,099,240	+		PP_3607	0.36	+1.9
4,099,241	-		PP_3607	0.36	-1.3
4,099,278	+		PP_3607	0.39	-0.8
4,099,588	+		PP_3607	0.65	+0.4
4,099,816	+		PP_3607	0.83	+1.1
4,099,816	+		PP_3607	0.83	-0.9
4,099,817	-		PP_3607	0.83	-1.5
4,099,857	+		PP_3607	0.87	+1.9
4,099,857	+		PP_3607	0.87	+0.7
4,099,898	+				+0.1
4,099,898	+				+0.0
4,099,898	+				-0.2
4,099,898	+				+0.3
4,099,899	-				+1.6
4,100,038	+				-1.2
4,100,038	+				+0.8
4,100,053	+				-1.3
4,100,055	+				-1.5
4,100,055	+				-0.1
4,100,056	-				-0.2
4,100,056	-				+0.2
4,100,056	-				+1.3
4,100,056	-				-0.5
4,100,082	+				+0.2
4,100,082	+				-0.0
4,100,083	-				+1.1
4,100,089	-				-1.2
4,100,104	+				-0.1
4,100,463	+		PP_3608	0.36	-0.5
4,100,464	-		PP_3608	0.36	+0.9
4,100,737	+		PP_3608	0.66	-1.1
4,100,737	+		PP_3608	0.66	-0.3
4,100,737	+		PP_3608	0.66	-0.6
4,100,737	+		PP_3608	0.66	-1.2
4,100,737	+		PP_3608	0.66	-1.1
4,100,737	+		PP_3608	0.66	+0.3
4,100,737	+		PP_3608	0.66	-2.6
4,100,738	-		PP_3608	0.66	-0.7
4,100,738	-		PP_3608	0.66	+1.0
4,100,738	-		PP_3608	0.66	+0.1
4,100,738	-		PP_3608	0.66	-1.6
4,100,738	-		PP_3608	0.66	-1.2
4,100,738	-		PP_3608	0.66	+0.5
4,100,738	-		PP_3608	0.66	-0.5
4,100,738	-		PP_3608	0.66	-0.6
4,100,738	-		PP_3608	0.66	-1.3
4,100,810	+		PP_3608	0.73	+0.3
4,100,811	-		PP_3608	0.74	-1.9
4,101,124	-		PP_3609	0.13	+0.1
4,101,124	-		PP_3609	0.13	+0.7
4,101,124	-		PP_3609	0.13	+0.2
4,101,256	-		PP_3609	0.37	+1.7
4,101,282	-		PP_3609	0.42	+0.7
4,101,306	+		PP_3609	0.47	-0.8
4,101,310	+		PP_3609	0.48	+1.0
4,101,310	+		PP_3609	0.48	+0.0
4,101,310	+		PP_3609	0.48	+1.3
4,101,310	+		PP_3609	0.48	+1.2
4,101,310	+		PP_3609	0.48	-2.3
4,101,310	+		PP_3609	0.48	+0.8
4,101,310	+		PP_3609	0.48	-0.1
4,101,311	-		PP_3609	0.48	+0.7
4,101,311	-		PP_3609	0.48	-1.5
4,101,311	-		PP_3609	0.48	+0.6
4,101,311	-		PP_3609	0.48	+1.4
4,101,311	-		PP_3609	0.48	+0.5
4,101,311	-		PP_3609	0.48	+0.0
4,101,311	-		PP_3609	0.48	+1.1
4,101,393	-		PP_3609	0.63	+1.4
4,101,489	-		PP_3609	0.81	-1.8
4,101,489	-		PP_3609	0.81	-0.5
4,101,595	-				+0.2
4,101,595	-				-1.2
4,101,634	-				-0.5
4,101,634	-				-0.4
4,101,739	+				-0.7
4,101,747	+				+0.6
4,101,879	+		PP_3610	0.17	+0.7
4,101,880	-		PP_3610	0.17	-1.4
4,101,880	-		PP_3610	0.17	+0.2