Strain Fitness in Pseudomonas putida KT2440 around PP_3408

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,857,148	+		PP_3406	0.42	-1.6
3,857,149	-		PP_3406	0.42	+0.5
3,857,154	+		PP_3406	0.43	+0.7
3,857,154	+		PP_3406	0.43	-2.9
3,857,155	-		PP_3406	0.43	+1.2
3,857,155	-		PP_3406	0.43	-0.7
3,857,155	-		PP_3406	0.43	+0.2
3,857,160	+		PP_3406	0.44	-0.5
3,857,161	-		PP_3406	0.45	-0.5
3,857,190	+		PP_3406	0.51	-1.6
3,857,190	+		PP_3406	0.51	-0.3
3,857,190	+		PP_3406	0.51	-0.2
3,857,190	+		PP_3406	0.51	+0.2
3,857,191	-		PP_3406	0.51	+1.4
3,857,205	+		PP_3406	0.54	+0.4
3,857,205	+		PP_3406	0.54	+0.5
3,857,205	+		PP_3406	0.54	-1.0
3,857,205	+		PP_3406	0.54	+0.3
3,857,205	+		PP_3406	0.54	-1.8
3,857,206	-		PP_3406	0.54	-0.8
3,857,206	-		PP_3406	0.54	+1.8
3,857,341	-		PP_3406	0.82	+0.1
3,857,341	-		PP_3406	0.82	-1.3
3,857,513	+		PP_3407	0.39	-0.3
3,857,513	+		PP_3407	0.39	+1.6
3,857,549	+		PP_3407	0.55	+0.6
3,857,549	+		PP_3407	0.55	-0.8
3,857,550	-		PP_3407	0.55	-2.8
3,857,652	-				-2.2
3,857,670	+				+1.1
3,857,685	+				-0.8
3,857,686	-				-1.0
3,857,689	-				+1.8
3,857,833	-				-0.2
3,857,924	-				+0.2
3,857,968	-				-0.5
3,857,968	-				+0.1
3,858,052	+				+0.6
3,858,495	-		PP_3408	0.63	-1.2
3,858,592	+		PP_3408	0.77	-0.0
3,858,592	+		PP_3408	0.77	-0.6
3,858,592	+		PP_3408	0.77	-2.1
3,858,593	-		PP_3408	0.78	-2.1
3,858,758	+				-0.5
3,858,759	-				-0.6
3,858,797	-		PP_3409	0.14	-0.3
3,858,942	-		PP_3409	0.51	-0.4
3,858,942	-		PP_3409	0.51	-0.6
3,858,965	+		PP_3409	0.57	-1.3
3,858,965	+		PP_3409	0.57	-0.1
3,858,966	-		PP_3409	0.57	-3.1
3,859,098	+				-1.4
3,859,176	+				-0.4
3,859,176	+				-3.5
3,859,177	-				-1.9
3,859,177	-				+0.3
3,859,177	-				-0.8
3,859,423	-		PP_3410	0.34	-0.6