Strain Fitness in Pseudomonas putida KT2440 around PP_3367

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,809,811	+				-3.4
3,809,812	-				+1.9
3,809,872	+				-0.7
3,809,872	+				-0.4
3,809,873	-				+0.1
3,810,161	+		PP_3366	0.31	-0.8
3,810,161	+		PP_3366	0.31	+1.4
3,810,167	+		PP_3366	0.32	+0.6
3,810,167	+		PP_3366	0.32	-3.1
3,810,168	-		PP_3366	0.32	+0.1
3,810,168	-		PP_3366	0.32	-1.0
3,810,168	-		PP_3366	0.32	-0.3
3,810,171	+		PP_3366	0.33	-0.4
3,810,196	+		PP_3366	0.35	-0.6
3,810,197	-		PP_3366	0.35	-1.3
3,810,197	-		PP_3366	0.35	-0.2
3,810,197	-		PP_3366	0.35	-0.6
3,810,197	-		PP_3366	0.35	-2.2
3,810,421	+		PP_3366	0.61	-0.2
3,810,421	+		PP_3366	0.61	-0.5
3,810,422	-		PP_3366	0.61	-2.9
3,810,526	+		PP_3366	0.73	+0.2
3,810,526	+		PP_3366	0.73	+1.0
3,810,540	-		PP_3366	0.74	-1.6
3,810,701	-				-0.6
3,810,701	-				+0.1
3,810,701	-				+0.6
3,810,751	+				-0.2
3,810,851	-		PP_3367	0.15	+0.6
3,810,852	+		PP_3367	0.15	+2.3
3,810,853	-		PP_3367	0.16	+0.4
3,810,968	-		PP_3367	0.33	+1.5
3,810,970	+		PP_3367	0.33	+1.6
3,810,970	+		PP_3367	0.33	+1.5
3,810,970	+		PP_3367	0.33	+1.3
3,810,985	-		PP_3367	0.36	+0.5
3,810,985	-		PP_3367	0.36	-0.3
3,811,063	+		PP_3367	0.47	+1.4
3,811,213	-		PP_3367	0.70	+0.8
3,811,265	+		PP_3367	0.78	+2.3
3,811,400	+				+1.1
3,811,401	-				+1.6
3,811,447	-				+0.6
3,811,543	+				-0.4
3,811,543	+				-1.3
3,811,631	+				+0.3
3,811,631	+				-1.4
3,811,631	+				+2.2
3,811,632	-				+0.6
3,811,632	-				+0.3
3,811,632	-				-1.2
3,811,632	-				+0.1
3,811,632	-				-0.9
3,811,632	-				+0.2
3,811,632	-				+0.1
3,811,666	+				+0.6
3,811,667	-				-0.4
3,811,672	+				+0.7
3,811,673	-				+0.6
3,811,950	+		PP_3368	0.23	-0.2
3,811,951	-		PP_3368	0.23	+0.9
3,811,951	-		PP_3368	0.23	-2.7
3,812,176	-				+1.5
3,812,312	-		PP_3368	0.54	-0.9
3,812,320	+		PP_3368	0.54	+0.8
3,812,320	+		PP_3368	0.54	-0.5
3,812,320	+		PP_3368	0.54	+0.4
3,812,320	+		PP_3368	0.54	+0.2
3,812,321	-		PP_3368	0.54	+0.4
3,812,321	-		PP_3368	0.54	+0.6
3,812,321	-		PP_3368	0.54	-1.7
3,812,321	-		PP_3368	0.54	-0.3
3,812,380	-		PP_3368	0.59	-1.4
3,812,380	-		PP_3368	0.59	+0.4
3,812,380	-		PP_3368	0.59	-0.6
3,812,380	-		PP_3368	0.59	+0.5