Strain Fitness in Pseudomonas putida KT2440 around PP_3245

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,678,959	+		PP_3243	0.69	-2.0
3,678,959	+		PP_3243	0.69	+0.9
3,679,103	+				-4.1
3,679,138	-				-4.2
3,679,163	+				-3.1
3,679,164	-				-1.5
3,679,184	+				-3.6
3,679,184	+				-1.6
3,679,184	+				-1.5
3,679,184	+				-2.3
3,679,185	-				-2.9
3,679,185	-				-1.5
3,679,254	-		PP_3244	0.17	-4.1
3,679,254	-		PP_3244	0.17	-3.5
3,679,254	-		PP_3244	0.17	-3.9
3,679,590	-		PP_3244	0.64	-2.3
3,679,650	+		PP_3244	0.72	-0.8
3,679,651	-		PP_3244	0.72	-3.7
3,679,909	+				-2.6
3,679,909	+				-3.1
3,679,958	-				-2.9
3,680,049	+		PP_3245	0.33	-3.8
3,680,102	+		PP_3245	0.52	-1.6
3,680,266	+				+2.7
3,680,266	+				+1.5
3,680,267	-				+2.4
3,680,319	+		PP_3246	0.15	+1.6
3,680,319	+		PP_3246	0.15	+1.9
3,680,319	+		PP_3246	0.15	+1.9
3,680,319	+		PP_3246	0.15	+2.9
3,680,319	+		PP_3246	0.15	+1.2
3,680,319	+		PP_3246	0.15	+2.1
3,680,319	+		PP_3246	0.15	+1.9
3,680,320	-		PP_3246	0.16	+2.8
3,680,320	-		PP_3246	0.16	+2.3
3,680,320	-		PP_3246	0.16	+3.1
3,680,320	-		PP_3246	0.16	+3.4
3,680,497	-		PP_3246	0.53	-1.8
3,680,508	+		PP_3246	0.56	+2.2
3,680,508	+		PP_3246	0.56	+2.9
3,680,508	+		PP_3246	0.56	+1.9
3,680,508	+		PP_3246	0.56	+1.6
3,680,508	+		PP_3246	0.56	+2.1
3,680,508	+		PP_3246	0.56	+2.1
3,680,508	+		PP_3246	0.56	+2.5
3,680,508	+		PP_3246	0.56	+3.3
3,680,508	+		PP_3246	0.56	+1.8
3,680,508	+		PP_3246	0.56	+2.7
3,680,508	+		PP_3246	0.56	+0.6
3,680,509	-		PP_3246	0.56	-3.2
3,680,509	-		PP_3246	0.56	-0.5
3,680,509	-		PP_3246	0.56	-0.9
3,680,509	-		PP_3246	0.56	-1.3
3,680,509	-		PP_3246	0.56	-0.7
3,680,509	-		PP_3246	0.56	-1.1
3,680,509	-		PP_3246	0.56	-0.0
3,680,512	+		PP_3246	0.57	+3.1
3,680,512	+		PP_3246	0.57	+2.0
3,680,512	+		PP_3246	0.57	+1.8
3,680,513	-		PP_3246	0.57	-1.1
3,680,513	-		PP_3246	0.57	-1.7
3,680,656	-		PP_3246	0.87	+0.1
3,680,853	-		PP_3247	0.11	-1.3
3,680,853	-		PP_3247	0.11	-1.3
3,680,931	+		PP_3247	0.19	+1.9
3,680,950	-		PP_3247	0.21	-3.2
3,681,062	+		PP_3247	0.34	+1.0
3,681,063	-				-1.2