Strain Fitness in Pseudomonas putida KT2440 around PP_3059

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,438,187	+		PP_3057	0.58	+0.1
3,438,188	-		PP_3057	0.58	+1.0
3,438,188	-		PP_3057	0.58	-0.7
3,438,193	-		PP_3057	0.58	+0.8
3,438,194	+		PP_3057	0.59	+0.1
3,438,194	+		PP_3057	0.59	+0.1
3,438,195	-		PP_3057	0.59	+1.2
3,438,195	-		PP_3057	0.59	-0.7
3,438,230	-		PP_3057	0.63	-0.4
3,438,249	+		PP_3057	0.66	+2.1
3,438,249	+		PP_3057	0.66	-0.1
3,438,249	+		PP_3057	0.66	-0.1
3,438,249	+		PP_3057	0.66	+0.6
3,438,249	+		PP_3057	0.66	+1.1
3,438,249	+		PP_3057	0.66	-1.0
3,438,249	+		PP_3057	0.66	-2.3
3,438,249	+		PP_3057	0.66	-1.2
3,438,249	+		PP_3057	0.66	-1.2
3,438,250	-		PP_3057	0.66	+0.6
3,438,250	-		PP_3057	0.66	-0.4
3,438,250	-		PP_3057	0.66	+0.2
3,438,252	+		PP_3057	0.66	-0.1
3,438,252	+		PP_3057	0.66	+0.2
3,438,253	-		PP_3057	0.67	+0.7
3,438,293	+		PP_3057	0.72	-0.3
3,438,310	-		PP_3057	0.74	+0.9
3,438,485	+				-0.1
3,438,485	+				+1.8
3,438,486	-				+0.4
3,438,486	-				-0.2
3,438,519	-				-1.4
3,438,551	-				+0.7
3,438,565	+				-0.2
3,438,565	+				+0.1
3,438,566	-				-0.5
3,438,670	-		PP_3058	0.32	-0.9
3,438,750	-		PP_3058	0.49	-1.0
3,438,750	-		PP_3058	0.49	-0.4
3,438,850	+		PP_3058	0.71	+0.5
3,438,850	+		PP_3058	0.71	-0.2
3,438,850	+		PP_3058	0.71	-0.8
3,438,850	+				+1.1
3,438,851	-		PP_3058	0.71	-0.1
3,438,851	-		PP_3058	0.71	-1.7
3,438,924	+		PP_3058	0.87	-0.1
3,438,924	+		PP_3058	0.87	+1.6
3,439,066	-				+0.7
3,439,218	+		PP_3059	0.12	-1.3
3,439,219	-		PP_3059	0.12	-0.1
3,439,219	-		PP_3059	0.12	-1.6
3,439,219	-		PP_3059	0.12	+0.4
3,439,299	-		PP_3059	0.19	-1.0
3,439,617	-		PP_3059	0.46	-0.2
3,439,617	-		PP_3059	0.46	-0.4
3,439,617	-		PP_3059	0.46	-0.3
3,439,617	-		PP_3059	0.46	-1.2
3,439,724	+		PP_3059	0.55	-0.8
3,439,843	+		PP_3059	0.65	-0.5
3,440,009	+		PP_3059	0.80	-1.6
3,440,009	+		PP_3059	0.80	-0.2
3,440,010	-		PP_3059	0.80	+0.7
3,440,090	+		PP_3059	0.87	-1.5
3,440,142	-				+0.4
3,440,142	-				+0.1
3,440,243	+				-0.5
3,440,244	-				-0.4
3,440,372	+		PP_3060	0.22	+0.9
3,440,372	+		PP_3060	0.22	+1.8
3,440,373	-		PP_3060	0.23	+0.1
3,440,392	+		PP_3060	0.26	+0.4
3,440,652	-		PP_3060	0.77	+0.6
3,440,652	-		PP_3060	0.77	+0.7
3,440,654	+		PP_3060	0.78	-0.4
3,440,655	-		PP_3060	0.78	+0.8
3,440,685	-		PP_3060	0.84	-1.6
3,440,685	-		PP_3060	0.84	+0.1
3,440,685	-		PP_3060	0.84	+0.5
3,440,685	-		PP_3060	0.84	-0.2
3,440,766	-				-0.7
3,441,047	+		PP_3061	0.79	-0.5
3,441,047	+		PP_3061	0.79	-0.1
3,441,047	+		PP_3061	0.79	+1.3
3,441,056	+		PP_3061	0.82	-1.0
3,441,056	+		PP_3061	0.82	-0.3
3,441,056	+		PP_3061	0.82	-0.3
3,441,057	-		PP_3061	0.82	+0.5
3,441,107	+				+0.3
3,441,107	+				-0.8
3,441,107	+				+1.2
3,441,108	-				-1.2