Strain Fitness in Pseudomonas putida KT2440 around PP_2886

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,283,361	+		PP_2885	0.30	-0.4
3,283,362	-		PP_2885	0.30	+0.5
3,283,645	+		PP_2885	0.53	+0.7
3,283,791	+		PP_2885	0.65	+1.5
3,283,791	+		PP_2885	0.65	-0.5
3,283,918	-		PP_2885	0.75	+0.2
3,284,317	+				-0.7
3,284,318	-				-2.4
3,284,318	-				-0.1
3,284,397	+		PP_2886	0.22	-0.7
3,284,433	+		PP_2886	0.28	-1.3
3,284,433	+		PP_2886	0.28	-0.7
3,284,433	+		PP_2886	0.28	-1.0
3,284,434	-		PP_2886	0.28	-0.2
3,284,434	-		PP_2886	0.28	+1.2
3,284,434	-		PP_2886	0.28	-1.0
3,284,434	-		PP_2886	0.28	-1.5
3,284,435	+		PP_2886	0.29	-0.5
3,284,435	+		PP_2886	0.29	-1.0
3,284,435	+		PP_2886	0.29	-1.0
3,284,435	+		PP_2886	0.29	-1.3
3,284,435	+		PP_2886	0.29	-0.2
3,284,435	+		PP_2886	0.29	+0.2
3,284,435	+		PP_2886	0.29	+0.7
3,284,435	+		PP_2886	0.29	-1.1
3,284,435	+		PP_2886	0.29	+0.1
3,284,436	-		PP_2886	0.29	+0.1
3,284,436	-		PP_2886	0.29	-1.6
3,284,436	-		PP_2886	0.29	-0.2
3,284,436	-		PP_2886	0.29	+1.3
3,284,436	-		PP_2886	0.29	+0.1
3,284,542	-		PP_2886	0.49	-1.4
3,284,870	+				-1.5
3,284,915	-				+0.2
3,284,915	-				+0.4
3,284,915	-				+0.7
3,284,915	-				+0.5
3,284,981	-		PP_2887	0.16	+1.6
3,285,076	+		PP_2887	0.25	+0.3
3,285,076	+		PP_2887	0.25	+2.0
3,285,077	-		PP_2887	0.25	-0.8
3,285,252	+		PP_2887	0.42	-1.1
3,285,252	+		PP_2887	0.42	+0.2
3,285,253	-		PP_2887	0.42	-0.8
3,285,413	+		PP_2887	0.57	-0.5
3,285,413	+		PP_2887	0.57	-1.2
3,285,414	-		PP_2887	0.57	+0.6
3,285,522	+		PP_2887	0.67	+0.1
3,285,523	-		PP_2887	0.68	-1.1
3,285,523	-		PP_2887	0.68	+0.8
3,285,523	-		PP_2887	0.68	+0.6
3,285,645	-		PP_2887	0.79	-0.0