Strain Fitness in Pseudomonas putida KT2440 around PP_2674

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,060,691	+				-0.3
3,061,093	+		PP_2673	0.38	-1.8
3,061,464	+				+0.2
3,061,492	+				-1.5
3,061,493	-				+1.1
3,061,493	-				-2.1
3,061,674	+				+0.6
3,061,708	+				+0.9
3,061,708	+				+1.9
3,061,708	+				+1.2
3,061,709	+				-2.4
3,061,709	-				-2.3
3,061,709	-				+0.0
3,061,955	-		PP_2674	0.21	-0.1
3,061,988	-		PP_2674	0.22	-0.4
3,062,005	+		PP_2674	0.23	-1.5
3,062,005	+		PP_2674	0.23	+1.2
3,062,006	-		PP_2674	0.23	+0.6
3,062,056	+		PP_2674	0.26	-0.1
3,062,056	+		PP_2674	0.26	-1.0
3,062,057	-		PP_2674	0.26	+0.8
3,062,080	+		PP_2674	0.27	+0.1
3,062,291	-		PP_2674	0.38	-1.1
3,062,354	-		PP_2674	0.42	+0.1
3,062,416	+		PP_2674	0.45	+0.4
3,062,417	-		PP_2674	0.45	-1.4
3,062,417	-		PP_2674	0.45	-0.0
3,062,417	-		PP_2674	0.45	+0.1
3,062,470	+		PP_2674	0.48	-3.6
3,062,522	+		PP_2674	0.50	-1.4
3,062,646	-		PP_2674	0.57	+0.1
3,062,882	-		PP_2674	0.69	+0.1
3,062,882	-		PP_2674	0.69	+0.9
3,063,055	+		PP_2674	0.79	+1.0
3,063,056	-		PP_2674	0.79	+1.3
3,063,097	-		PP_2674	0.81	-1.9
3,063,187	+		PP_2674	0.85	-1.9
3,063,187	+		PP_2674	0.85	-2.6
3,063,453	+				-1.4
3,063,453	+				+0.4
3,063,454	-				-1.2
3,063,554	-				-0.5
3,063,596	+				+0.8
3,063,597	-				-0.2
3,063,599	+				+0.7
3,063,600	-				+1.4
3,063,610	+				+0.2
3,063,658	-				+0.0
3,063,658	-				+1.4
3,063,658	-				+1.2
3,063,711	+				+0.5
3,063,712	-				+0.1
3,063,713	-				-0.2
3,064,091	+		PP_2675	0.81	-0.5
3,064,091	+		PP_2675	0.81	-0.0
3,064,092	-		PP_2675	0.81	+0.7
3,064,092	-		PP_2675	0.81	+0.5
3,064,113	-		PP_2675	0.86	-0.2
3,064,148	+				+0.1
3,064,149	-				+1.0
3,064,255	+		PP_2676	0.13	+1.2
3,064,256	-		PP_2676	0.13	-1.5
3,064,256	-		PP_2676	0.13	+0.2
3,064,256	-		PP_2676	0.13	+0.5
3,064,450	+		PP_2676	0.34	+0.8
3,064,451	-		PP_2676	0.34	+1.8
3,064,451	-		PP_2676	0.34	-0.5