Strain Fitness in Pseudomonas putida KT2440 around PP_2645

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
3,029,782	+		PP_2643	0.87	+0.0
3,029,783	-		PP_2643	0.87	-2.4
3,030,029	+				-1.5
3,030,076	+				-3.0
3,030,150	+				+0.8
3,030,150	+				-3.0
3,030,151	-				+0.1
3,030,419	-				-2.4
3,030,478	-				-3.1
3,030,539	+				+1.4
3,030,554	-				-4.0
3,030,754	+				-4.0
3,030,754	+				-4.0
3,030,759	+				-3.1
3,030,759	+				-3.7
3,030,759	+				-2.9
3,030,991	+		PP_2645	0.11	-1.9
3,030,991	+		PP_2645	0.11	-3.4
3,030,991	+		PP_2645	0.11	-1.9
3,030,991	+		PP_2645	0.11	-4.1
3,030,991	+		PP_2645	0.11	-4.0
3,030,992	-		PP_2645	0.11	-3.2
3,030,992	-		PP_2645	0.11	-3.2
3,030,992	-		PP_2645	0.11	-3.9
3,030,992	-		PP_2645	0.11	-2.8
3,030,992	-		PP_2645	0.11	-3.3
3,030,992	-		PP_2645	0.11	-2.5
3,030,992	-		PP_2645	0.11	-2.4
3,030,995	+		PP_2645	0.11	-3.9
3,030,996	-		PP_2645	0.11	-2.6
3,030,996	-		PP_2645	0.11	-0.6
3,030,996	-		PP_2645	0.11	-3.1
3,030,996	-		PP_2645	0.11	-3.8
3,030,996	-		PP_2645	0.11	-3.3
3,031,034	-		PP_2645	0.12	-3.6
3,031,142	-		PP_2645	0.16	-3.3
3,031,188	+		PP_2645	0.18	-3.3
3,031,341	+		PP_2645	0.23	+0.1
3,031,402	-		PP_2645	0.26	-3.2
3,031,540	+		PP_2645	0.31	-0.3
3,031,540	+		PP_2645	0.31	-3.2
3,031,540	+		PP_2645	0.31	-3.5
3,032,054	-		PP_2645	0.49	-4.3
3,032,054	-		PP_2645	0.49	-2.1
3,032,054	-		PP_2645	0.49	-2.3
3,032,336	-		PP_2645	0.59	-2.9
3,032,457	-		PP_2645	0.64	-4.1
3,032,457	-		PP_2645	0.64	-3.6
3,032,848	+		PP_2645	0.78	-3.9
3,032,965	+		PP_2645	0.82	-4.3
3,032,965	+		PP_2645	0.82	-3.2
3,032,965	+		PP_2645	0.82	-3.1
3,032,966	-		PP_2645	0.82	-3.6
3,033,071	+		PP_2645	0.86	-3.7
3,033,079	-		PP_2645	0.86	-3.2
3,033,122	-		PP_2645	0.88	-3.7
3,033,144	-		PP_2645	0.89	-4.2
3,033,144	-		PP_2645	0.89	-2.5
3,033,207	-				-3.7
3,033,207	-				-3.9
3,033,270	-				-3.2
3,033,300	+				-2.8
3,033,304	+				-2.4
3,033,304	+				-3.5
3,033,304	+				-3.6
3,033,305	-				-3.6
3,033,361	+				-2.2
3,033,362	-				-3.6
3,033,394	+				-3.7
3,033,395	-				-3.7
3,033,395	-				-0.9
3,033,427	+				-3.0
3,033,427	+				-2.5
3,033,427	+				-2.0
3,033,428	-				-3.8
3,033,428	-				-3.4
3,033,428	-				-0.2
3,033,429	+				-2.9
3,033,491	+				-2.8
3,033,491	+				-3.5
3,033,492	-				-2.5
3,033,508	+		PP_2646	0.12	-3.9
3,033,509	-		PP_2646	0.12	-3.9
3,033,811	+		PP_2646	0.89	-3.6
3,033,812	-		PP_2646	0.89	-2.3
3,033,854	-				-0.5
3,033,854	-				-2.3
3,033,874	+				-2.7
3,033,879	+				+0.1
3,033,880	-				-3.8
3,033,880	-				-3.0
3,033,886	-				-1.8
3,034,075	+				+0.3
3,034,075	+				+1.8
3,034,075	+				-0.2
3,034,076	-				-0.0
3,034,076	-				+0.7
3,034,232	+				+1.8
3,034,232	+		PP_2647	0.22	+0.4
3,034,392	+		PP_2647	0.35	-1.1
3,034,392	+		PP_2647	0.35	-0.0
3,034,418	-		PP_2647	0.37	+0.8