Strain Fitness in Pseudomonas putida KT2440 around PP_2570

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,936,783	+		PP_2569	0.49	+0.2
2,936,783	+		PP_2569	0.49	-1.5
2,937,003	+		PP_2569	0.62	-1.0
2,937,004	-		PP_2569	0.62	+0.6
2,937,004	-		PP_2569	0.62	+0.7
2,937,146	+		PP_2569	0.70	-1.7
2,937,146	+		PP_2569	0.70	+0.3
2,937,146	+		PP_2569	0.70	-0.4
2,937,377	+		PP_2569	0.84	+1.2
2,937,377	+		PP_2569	0.84	-0.3
2,937,377	+		PP_2569	0.84	+0.1
2,937,378	-		PP_2569	0.84	-1.1
2,937,378	-		PP_2569	0.84	+0.1
2,937,378	-		PP_2569	0.84	-0.5
2,937,464	+		PP_2569	0.89	-1.3
2,937,539	-				+0.2
2,937,542	+				-0.9
2,937,542	+				+0.8
2,937,542	+				+1.2
2,937,542	+				+0.1
2,937,542	+				-0.2
2,937,542	+				-2.8
2,937,543	-				-0.8
2,937,543	-				+0.3
2,937,543	-				-1.5
2,939,387	+				+1.4
2,939,387	+				-1.7
2,939,393	+				+0.2
2,939,451	+				+0.6
2,939,452	-				+0.1
2,939,504	+				-0.2
2,939,598	-		PP_2572	0.16	+1.0
2,939,747	+		PP_2572	0.39	-2.2
2,939,748	-		PP_2572	0.39	+0.0
2,939,780	-		PP_2572	0.44	+1.0
2,939,783	+		PP_2572	0.45	-0.0
2,939,783	+		PP_2572	0.45	-2.4
2,939,784	-		PP_2572	0.45	+0.7