Strain Fitness in Pseudomonas putida KT2440 around PP_2331

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,657,817	-				+1.3
2,657,817	-				-0.0
2,658,044	+		PP_2330	0.23	-0.0
2,658,045	-		PP_2330	0.23	-1.8
2,658,046	+		PP_2330	0.23	-2.3
2,658,068	-		PP_2330	0.25	-1.4
2,658,283	-		PP_2330	0.47	-2.9
2,658,332	-		PP_2330	0.52	-3.3
2,658,410	-		PP_2330	0.60	-0.3
2,658,410	-		PP_2330	0.60	-0.4
2,658,579	-		PP_2330	0.77	-1.3
2,658,695	-		PP_2330	0.89	-2.1
2,658,713	-				-2.0
2,658,713	-				-1.0
2,658,713	-				-2.2
2,658,725	-				-1.2
2,658,725	-				-0.9
2,658,735	-				-3.0
2,658,930	+				-0.9
2,658,930	+				-2.7
2,658,931	-				-2.9
2,658,931	-				-2.4
2,659,163	+		PP_2331	0.24	-0.6
2,659,209	+		PP_2331	0.27	+0.3
2,659,209	+		PP_2331	0.27	-1.6
2,659,434	+		PP_2331	0.41	+0.7
2,659,435	-		PP_2331	0.41	-2.8
2,659,626	+		PP_2331	0.54	-1.6
2,659,877	+				-0.4
2,659,878	-		PP_2331	0.70	-2.3
2,659,878	-		PP_2331	0.70	-2.1
2,659,878	-		PP_2331	0.70	-4.2
2,659,878	-				+1.8
2,659,878	-		PP_2331	0.70	-2.7
2,659,978	-		PP_2331	0.77	-3.1
2,660,004	+		PP_2331	0.78	+0.0
2,660,004	+		PP_2331	0.78	-2.3
2,660,005	-				-0.4
2,660,005	-		PP_2331	0.78	-0.1
2,660,085	+		PP_2331	0.84	-1.0
2,660,086	-		PP_2331	0.84	-4.1
2,660,086	-		PP_2331	0.84	-2.2
2,660,086	-				-0.2
2,660,086	-		PP_2331	0.84	-1.1
2,660,086	-		PP_2331	0.84	-2.0
2,660,263	-				-1.5
2,660,323	+				-3.0
2,660,342	+				-0.8
2,660,394	+				-1.9
2,660,395	-		PP_2332	0.10	-0.3
2,660,549	+		PP_2332	0.39	-0.9
2,660,573	+		PP_2332	0.43	-2.3
2,660,573	+		PP_2332	0.43	+0.3
2,660,573	+		PP_2332	0.43	-2.2
2,660,657	+		PP_2332	0.59	-1.9
2,660,658	-		PP_2332	0.59	-2.7
2,660,666	-		PP_2332	0.61	-0.0
2,660,784	-		PP_2332	0.82	-1.4
2,660,798	+		PP_2332	0.85	-0.9
2,660,798	+		PP_2332	0.85	-3.5
2,660,799	-		PP_2332	0.85	-2.3
2,660,799	-		PP_2332	0.85	+0.4
2,660,848	+				-2.9
2,660,848	+				-0.3
2,660,848	+				-1.9
2,660,849	-				+0.2
2,660,849	-				-0.9
2,660,849	-				-2.8
2,660,849	-				-2.2
2,660,857	+				-2.1
2,660,858	-				-0.2
2,660,858	-				-1.8
2,660,868	+				+0.3
2,660,868	+				-0.7
2,660,869	-				-0.4
2,660,869	-				+1.9
2,660,869	-				-0.5
2,660,869	-				-3.9
2,660,906	+				-0.2
2,660,906	+				-3.1
2,660,906	+				-0.3
2,660,907	-				+0.2
2,660,959	+				-1.8
2,660,959	+				-1.8
2,660,960	-				-0.7
2,661,001	+				-2.5
2,661,025	+				-0.1
2,661,025	+				+0.3
2,661,025	+				-3.7
2,661,026	-				+0.1
2,661,331	+		PP_2333	0.21	-0.4
2,661,332	-		PP_2333	0.21	+1.3
2,661,332	-		PP_2333	0.21	-1.2