Strain Fitness in Pseudomonas putida KT2440 around PP_1912

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,154,643	+		PP_1909	0.79	-1.5
2,154,721	+				-0.2
2,154,738	+				+0.2
2,155,627	+				-1.3
2,155,761	+		PP_1912	0.20	-0.0
2,156,128	+		PP_1912	0.56	-3.0
2,156,129	-		PP_1912	0.56	-3.6
2,156,183	+		PP_1912	0.62	-1.9
2,156,183	+		PP_1912	0.62	-3.8
2,156,184	-		PP_1912	0.62	-1.0
2,156,184	-		PP_1912	0.62	-1.1
2,156,184	-		PP_1912	0.62	-3.0
2,156,184	-		PP_1912	0.62	-2.4
2,156,184	-		PP_1912	0.62	-0.2
2,156,263	-		PP_1912	0.70	-1.9
2,156,263	-		PP_1912	0.70	-1.5
2,156,263	-		PP_1912	0.70	-1.8
2,156,263	-		PP_1912	0.70	-2.1
2,156,410	+		PP_1912	0.84	-0.6
2,156,433	+		PP_1912	0.86	-2.5
2,156,683	+				-0.5
2,156,683	+				-1.9
2,156,683	+				+0.6