Strain Fitness in Pseudomonas putida KT2440 around PP_1808

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,031,588	+		PP_1807	0.22	+0.7
2,031,588	+		PP_1807	0.22	+0.1
2,031,589	-		PP_1807	0.22	+2.7
2,031,686	+		PP_1807	0.34	+0.7
2,031,686	+		PP_1807	0.34	+0.4
2,031,686	+		PP_1807	0.34	-0.8
2,031,687	-		PP_1807	0.34	-0.5
2,031,687	-		PP_1807	0.34	-0.7
2,031,687	-		PP_1807	0.34	-0.3
2,031,687	-		PP_1807	0.34	+0.9
2,031,795	-		PP_1807	0.47	+0.1
2,031,795	-		PP_1807	0.47	+0.1
2,031,795	-		PP_1807	0.47	-0.2
2,031,882	+		PP_1807	0.57	+0.5
2,031,882	+		PP_1807	0.57	+0.2
2,031,882	+		PP_1807	0.57	-1.7
2,031,882	+		PP_1807	0.57	-0.2
2,031,882	+		PP_1807	0.57	-0.2
2,031,882	+		PP_1807	0.57	-1.2
2,031,883	-		PP_1807	0.57	+1.0
2,031,883	-		PP_1807	0.57	+1.6
2,031,883	-		PP_1807	0.57	+0.7
2,031,883	-		PP_1807	0.57	+0.0
2,032,049	-		PP_1807	0.77	+0.3
2,032,049	-		PP_1807	0.77	-1.1
2,032,099	+		PP_1807	0.83	+0.2
2,032,099	+		PP_1807	0.83	+1.0
2,032,099	+		PP_1807	0.83	+0.5
2,032,099	+		PP_1807	0.83	+0.2
2,032,099	+		PP_1807	0.83	+1.9
2,032,100	-		PP_1807	0.83	-0.6
2,032,132	+		PP_1807	0.87	+0.9
2,032,132	+				+0.3
2,032,133	-		PP_1807	0.87	+0.3
2,032,133	-		PP_1807	0.87	+0.4
2,032,133	-		PP_1807	0.87	+1.3
2,032,133	-		PP_1807	0.87	+1.7
2,032,148	+		PP_1807	0.88	+1.1
2,032,149	-		PP_1807	0.89	+0.7
2,032,256	+				-0.1
2,032,264	+				-0.1
2,032,296	+				-2.0
2,032,299	+				-1.1
2,032,299	+				+0.3
2,032,299	+				+0.4
2,032,299	+				+0.5
2,032,299	+				-0.3
2,032,300	-				-1.1
2,032,300	-				-0.5
2,032,446	+				+1.9
2,032,446	+				+0.0
2,032,446	+				-1.4
2,032,446	+				+1.5
2,032,446	+				+1.7
2,032,446	+				+0.0
2,032,446	+				+0.4
2,032,447	-				-1.4
2,032,448	+				-1.1
2,032,448	+				+0.6
2,032,449	-				+0.6
2,032,449	-				+1.0
2,032,449	-				+1.8
2,032,449	-				+1.7
2,032,482	+				-1.3
2,032,482	+				-1.8
2,032,483	-				+1.9
2,032,483	-				-0.2
2,032,483	-				+0.7
2,032,501	+				+0.5
2,032,502	-				-0.2
2,032,529	+				-0.2
2,032,529	+				+0.6
2,032,529	+				-1.1
2,032,530	-				+1.3
2,032,534	+				+0.4
2,032,534	+				+1.4
2,032,535	-				-0.2
2,033,424	-		PP_1808	0.54	-1.0
2,033,424	-		PP_1808	0.54	-1.4
2,033,424	-		PP_1808	0.54	-1.5
2,033,424	-		PP_1808	0.54	-0.5
2,033,424	-		PP_1808	0.54	-0.3
2,033,424	-		PP_1808	0.54	-1.5
2,034,158	+				-0.1
2,034,158	+				-1.9
2,034,195	+				+0.5
2,034,195	+				+0.1
2,034,195	+				-1.3
2,034,248	+				+0.4
2,034,248	+				+1.7
2,034,248	+				-1.7
2,034,248	+				+0.2
2,034,249	-				-2.9
2,034,249	-				+0.4
2,034,297	+				+1.3
2,034,312	-				-0.9
2,034,315	+				-2.2
2,034,315	+				+0.2
2,034,315	+				+0.3
2,034,347	+				-0.1
2,034,347	+				+0.8
2,034,348	-				+1.2
2,034,348	-				+1.7
2,034,383	+				-0.1
2,034,383	+				+1.3
2,034,384	-				+0.8
2,034,398	+				-2.3
2,034,399	-				-0.9
2,034,399	-				+1.4
2,034,415	-				-0.5
2,034,415	-				-1.1
2,034,475	+				+0.8
2,034,475	+				-1.6
2,034,475	+				+0.1
2,034,507	+				+0.8
2,034,507	+				-0.1
2,034,508	-				+0.2
2,034,508	-				-0.6
2,034,553	+				-0.0
2,034,554	-				+0.3
2,034,614	+				-0.2
2,034,628	+				-0.4
2,034,628	+				-1.4
2,034,655	+				+2.2
2,034,656	-				+0.1
2,034,661	-				-0.8
2,034,661	-				-1.3
2,034,670	+				-1.4
2,034,670	+				-0.1
2,034,670	+				-0.1
2,034,671	-				+0.7
2,034,689	-				+0.2
2,034,695	-				-2.5
2,034,695	-				-0.1
2,034,780	+				+1.2
2,034,780	+				-0.6
2,034,781	-				+0.6
2,034,781	-				-3.3
2,034,789	+				+1.5
2,034,790	-				+1.7
2,034,790	-				+1.3
2,034,790	-				-0.3
2,034,790	-				+1.0
2,034,793	+				+0.8
2,034,793	+				+0.7
2,034,793	+				+0.8
2,034,793	+				+0.3
2,034,794	-				+0.2
2,034,794	-				-0.7
2,034,794	-				+0.9
2,034,849	+				+0.4
2,034,850	-				-0.6
2,034,850	-				+1.3
2,035,046	-				-0.9
2,035,073	+				+0.0
2,035,073	+				-1.1
2,035,074	-				+0.2
2,035,074	-				+0.7
2,035,074	-				-0.3
2,035,076	+				-1.1
2,035,076	+				-0.1
2,035,110	+				+0.7
2,035,110	+				-1.6
2,035,111	-				-0.4
2,035,111	-				-0.5
2,035,117	+				+0.8
2,035,117	+				+0.6
2,035,118	-				+0.7
2,035,176	+				+0.7