Strain Fitness in Pseudomonas putida KT2440 around PP_1726

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,924,854	+				-1.7
1,924,854	+				-1.5
1,924,855	-				+0.2
1,924,855	-				-0.1
1,924,855	-				+0.5
1,924,855	-				+0.6
1,925,072	+		PP_1725	0.25	+0.9
1,925,072	+		PP_1725	0.25	+0.1
1,925,072	+		PP_1725	0.25	-0.2
1,925,073	-		PP_1725	0.25	-0.5
1,925,106	+		PP_1725	0.29	+0.5
1,925,106	+		PP_1725	0.29	+0.2
1,925,107	-		PP_1725	0.29	+0.6
1,925,107	-		PP_1725	0.29	-0.2
1,925,290	-		PP_1725	0.51	+0.0
1,925,290	-		PP_1725	0.51	+0.8
1,925,367	+		PP_1725	0.60	-1.6
1,925,368	-		PP_1725	0.60	-0.1
1,925,388	+		PP_1725	0.62	+0.2
1,925,389	-		PP_1725	0.63	+0.3
1,925,521	-		PP_1725	0.78	+0.2
1,925,521	-		PP_1725	0.78	-0.6
1,925,562	+		PP_1725	0.83	-0.6
1,925,590	-		PP_1725	0.87	+0.6
1,925,628	+				-0.6
1,925,628	+				+0.5
1,925,628	+				+0.9
1,925,628	+				+0.2
1,925,628	+				+0.8
1,925,629	-				+0.2
1,925,723	+				-0.8
1,925,723	+				+0.5
1,925,723	+				-0.0
1,925,723	+				+0.4
1,925,723	+				+0.5
1,925,723	+				+1.2
1,925,724	-				-1.2
1,925,724	-				-0.8
1,925,729	+				-0.4
1,925,729	+				+1.1
1,925,730	-				-0.8
1,925,730	-				+0.6
1,925,736	+				-0.9
1,925,746	+				-0.6
1,925,746	+				-0.1
1,925,747	-				-0.1
1,925,785	+				+0.5
1,925,785	+				+1.1
1,925,786	-				+0.2
1,925,786	-				+0.4
1,925,786	-				+0.9
1,925,786	-				-0.9
1,925,786	-				+0.2
1,925,802	+				-0.8
1,925,901	+				-0.8
1,926,018	+		PP_1726	0.20	-2.3
1,926,018	+		PP_1726	0.20	-0.9
1,926,018	+		PP_1726	0.20	-0.5
1,926,018	+		PP_1726	0.20	+0.5
1,926,018	+		PP_1726	0.20	-0.2
1,926,019	-		PP_1726	0.20	-1.3
1,926,057	+		PP_1726	0.24	+1.0
1,926,057	+		PP_1726	0.24	-1.5
1,926,076	+		PP_1726	0.26	-0.3
1,926,077	-		PP_1726	0.26	-0.5
1,926,077	-		PP_1726	0.26	-1.5
1,926,077	-		PP_1726	0.26	+0.5
1,926,078	+		PP_1726	0.26	+0.1
1,926,079	-		PP_1726	0.26	-0.7
1,926,301	-		PP_1726	0.47	-0.1
1,926,301	-		PP_1726	0.47	+1.5
1,926,372	+		PP_1726	0.54	+0.4
1,926,372	+		PP_1726	0.54	-2.2
1,926,372	+		PP_1726	0.54	-1.2
1,926,373	-		PP_1726	0.54	-2.5
1,926,373	-		PP_1726	0.54	-0.7
1,926,531	+		PP_1726	0.69	+0.5
1,926,531	+		PP_1726	0.69	-1.9
1,926,531	+		PP_1726	0.69	-1.8
1,926,532	-		PP_1726	0.69	+0.0
1,926,532	-		PP_1726	0.69	+0.4
1,926,532	-		PP_1726	0.69	-0.3
1,926,532	-		PP_1726	0.69	-0.8
1,926,678	+		PP_1726	0.82	-1.6
1,926,910	+				+0.5
1,926,972	+				-2.6
1,926,972	+				+0.5
1,926,973	-				+1.0
1,926,999	-				-0.2
1,926,999	-				+2.0
1,927,028	+				+1.8
1,927,028	+				+0.1
1,927,029	-				-1.1
1,927,029	-				-0.8
1,927,029	-				+0.1
1,927,035	+				-1.2
1,927,035	+				+1.2
1,927,035	+				-0.2
1,927,035	+				-0.6
1,927,036	-				-0.4
1,927,036	-				+0.4
1,927,036	-				-0.2
1,927,036	-				-0.3
1,927,127	+				-1.0
1,927,127	+				-1.5
1,927,128	-				+0.9
1,927,128	-				-0.5
1,927,139	-				+0.1
1,927,170	+				+1.0
1,927,179	+				+0.2
1,927,179	+				+0.6
1,927,179	+				+1.0
1,927,179	+				-3.0
1,927,179	+				-0.6
1,927,180	-				-1.9
1,927,184	-				-0.6
1,927,184	-				-0.9
1,927,424	+		PP_1727	0.32	-1.2
1,927,425	-		PP_1727	0.32	-1.2
1,927,425	-		PP_1727	0.32	-0.8
1,927,425	-		PP_1727	0.32	+0.6
1,927,487	-		PP_1727	0.41	-0.7
1,927,487	-		PP_1727	0.41	+1.6
1,927,614	-		PP_1727	0.59	+0.1
1,927,614	-		PP_1727	0.59	-1.2
1,927,625	+		PP_1727	0.61	+0.4
1,927,640	+		PP_1727	0.63	+0.1
1,927,691	+		PP_1727	0.70	-0.0
1,927,692	-		PP_1727	0.70	+0.2
1,927,704	-		PP_1727	0.72	+1.6
1,927,810	+		PP_1727	0.86	-0.0
1,927,811	-		PP_1727	0.87	-1.8
1,927,862	+				+0.6
1,927,863	-				+0.0