Strain Fitness in Pseudomonas putida KT2440 around PP_1623

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,818,256	+				-0.9
1,818,307	+		PP_1622	0.57	-1.2
1,818,308	-		PP_1622	0.57	-1.9
1,818,654	+				+0.3
1,818,654	+				-0.8
1,818,655	-				-1.5
1,818,676	+				-0.4
1,818,676	+				+1.6
1,818,676	+				+0.6
1,818,677	-				-2.2
1,818,751	+				-1.7
1,818,751	+				-2.0
1,818,751	+				-2.7
1,818,751	+				-2.9
1,818,752	-				-1.7
1,818,752	-				-2.2
1,818,862	+		PP_1623	0.11	-2.8
1,818,863	-		PP_1623	0.11	-3.4
1,818,863	-		PP_1623	0.11	-1.5
1,818,915	+		PP_1623	0.16	-2.0
1,818,915	+		PP_1623	0.16	-3.0
1,818,915	+		PP_1623	0.16	-2.3
1,818,916	-		PP_1623	0.16	-2.8
1,818,954	+		PP_1623	0.20	-3.6
1,818,954	+		PP_1623	0.20	-2.4
1,818,954	+		PP_1623	0.20	-3.6
1,818,955	-		PP_1623	0.20	-3.0
1,818,955	-		PP_1623	0.20	-2.1
1,818,955	-				-0.3
1,819,098	+		PP_1623	0.34	-1.0
1,819,206	+		PP_1623	0.45	-2.8
1,819,207	-		PP_1623	0.45	-0.4
1,819,406	+		PP_1623	0.64	-3.2
1,819,407	-		PP_1623	0.65	-2.3
1,819,407	-		PP_1623	0.65	-4.3
1,819,407	-		PP_1623	0.65	-2.3
1,819,597	+		PP_1623	0.83	-1.8
1,819,597	+		PP_1623	0.83	-3.3
1,819,598	-				-1.5
1,819,598	-		PP_1623	0.84	-3.1
1,819,631	+		PP_1623	0.87	-3.1
1,819,761	+				-1.3
1,819,761	+				-1.3
1,819,761	+				-0.6
1,819,761	+				-0.4
1,819,761	+				+0.8
1,819,766	-				-0.9
1,819,838	-				-0.6
1,820,442	+				+1.5