Strain Fitness in Pseudomonas putida KT2440 around PP_1586

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,776,872	+				+0.3
1,776,873	-				+0.4
1,776,873	-				+0.3
1,776,873	-				+1.6
1,776,924	-				+0.3
1,776,924	-				-0.1
1,776,924	-				-2.1
1,776,947	+				-2.1
1,776,963	+				+0.3
1,776,963	+				+1.0
1,776,963	+				+1.9
1,776,963	+				-1.1
1,776,964	-				-0.5
1,776,964	-				+0.8
1,776,964	-				+0.4
1,776,964	-				-1.2
1,776,964	-				-0.7
1,776,964	-				-1.5
1,776,974	+				+1.1
1,776,974	+				-0.4
1,776,974	+				+0.2
1,776,975	-				-0.5
1,776,975	-				-0.7
1,776,975	-				+1.2
1,776,975	-				-1.7
1,776,975	-				+0.0
1,777,106	+		PP_5476	0.47	-1.1
1,777,106	+		PP_5476	0.47	+1.5
1,777,107	-		PP_5476	0.47	+1.0
1,777,107	-		PP_5476	0.47	+0.6
1,777,107	-		PP_5476	0.47	+1.3
1,777,107	-		PP_5476	0.47	-1.4
1,777,107	-		PP_5476	0.47	-1.1
1,777,107	-		PP_5476	0.47	+0.7
1,777,155	-		PP_5476	0.63	+0.1
1,777,155	-		PP_5476	0.63	-0.4
1,777,155	-		PP_5476	0.63	-0.1
1,777,155	-		PP_5476	0.63	-0.9
1,777,301	+				-0.2
1,777,302	+				-1.7
1,777,302	+				-1.0
1,777,303	-				-0.1
1,777,348	-				-0.1
1,777,417	+				+0.1
1,777,426	+				+1.2
1,777,427	-				+0.3
1,777,438	+				-2.3
1,777,438	+				+1.8
1,777,439	-				-3.4
1,777,496	-				+2.0
1,777,541	+				+0.4
1,777,542	-				+0.2
1,777,542	-				+1.0
1,777,751	-		PP_1585	0.64	+1.3
1,777,751	-		PP_1585	0.64	-0.6
1,777,843	-				-1.0
1,777,843	-				+0.2
1,777,843	-				+0.7
1,777,893	-				-3.3
1,777,893	-				-0.5
1,777,949	+		PP_1586	0.30	-3.0
1,777,950	-		PP_1586	0.30	-0.8
1,778,009	+		PP_1586	0.51	-0.3
1,778,009	+		PP_1586	0.51	+0.1
1,778,009	+		PP_1586	0.51	-0.4
1,778,009	+		PP_1586	0.51	-2.5
1,778,009	+		PP_1586	0.51	-1.8
1,778,010	-		PP_1586	0.52	-0.6
1,778,010	-		PP_1586	0.52	-0.8
1,778,010	-		PP_1586	0.52	+0.0
1,778,072	+		PP_1586	0.74	+0.3
1,778,073	-		PP_1586	0.74	-0.7
1,778,073	-		PP_1586	0.74	-1.0
1,778,073	-		PP_1586	0.74	+0.3
1,778,129	+				+1.0
1,778,129	+				+0.1
1,778,129	+				-1.0
1,778,129	+				+0.6
1,778,181	-				+0.1
1,778,182	+				-1.1
1,778,183	-				+1.0
1,778,198	+				+0.2
1,778,198	+				+0.1
1,778,199	-				+2.0
1,778,214	+				+1.7
1,778,267	+				+0.8
1,778,267	+				-0.2
1,778,267	+				+0.2
1,778,271	+				-0.6
1,778,271	+				-0.7
1,778,272	-				+0.4
1,778,272	-				+0.1
1,778,272	-				+0.4
1,778,272	-				-1.6
1,778,272	-				+0.6
1,778,272	-				-1.4
1,778,292	+				+1.0
1,778,292	+				-1.2
1,778,326	+				+0.3
1,778,327	-				+2.3
1,778,331	+				-1.1
1,778,331	+				-0.5
1,778,331	+				+0.4
1,778,331	+				-1.8
1,778,331	+				-0.7
1,778,332	-				+0.1
1,778,332	-				+0.7
1,778,332	-				-0.5
1,778,332	-				-0.3
1,778,332	-				+1.2
1,778,361	+				-0.9
1,778,407	+				+0.4
1,778,486	+				+0.5
1,778,537	+		PP_1587	0.12	+2.0
1,778,538	-		PP_1587	0.12	-0.5
1,778,567	+		PP_1587	0.13	-1.0
1,778,622	-		PP_1587	0.17	+2.7
1,778,622	-		PP_1587	0.17	+1.2
1,778,622	-		PP_1587	0.17	+0.2
1,778,692	+		PP_1587	0.21	+0.5
1,778,693	-		PP_1587	0.21	+1.2
1,778,976	-		PP_1587	0.37	+1.0
1,779,080	-		PP_1587	0.43	-0.7