Strain Fitness in Pseudomonas putida KT2440 around PP_1206

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,385,052	-				-2.4
1,385,065	-				-1.5
1,385,192	+				-3.8
1,385,193	-				-1.1
1,385,193	-				-0.4
1,385,193	-				-2.4
1,385,193	-				-2.5
1,385,210	+				-1.6
1,385,211	-				-1.6
1,385,252	+				-2.0
1,385,252	+				-0.9
1,385,255	+				-1.7
1,385,256	-				-1.2
1,385,256	-				+0.7
1,385,276	+				-2.1
1,385,276	+				-3.5
1,385,276	+				-3.0
1,385,276	+				-2.8
1,385,276	+				-0.6
1,385,277	-				-1.3
1,385,333	+		PP_1206	0.11	-1.6
1,385,333	+		PP_1206	0.11	-1.2
1,385,333	+		PP_1206	0.11	-1.8
1,385,333	+		PP_1206	0.11	-3.1
1,385,333	+		PP_1206	0.11	-2.9
1,385,404	+		PP_1206	0.17	-1.2
1,385,404	+		PP_1206	0.17	-2.5
1,385,405	-		PP_1206	0.17	-1.4
1,385,408	+		PP_1206	0.17	-2.1
1,385,408	+		PP_1206	0.17	-1.1
1,385,409	-		PP_1206	0.17	+0.3
1,385,442	-		PP_1206	0.20	-2.4
1,385,463	-		PP_1206	0.21	-1.6
1,385,463	-		PP_1206	0.21	-3.1
1,385,551	-		PP_1206	0.28	-1.9
1,385,556	-		PP_1206	0.29	-1.3
1,385,556	-		PP_1206	0.29	-0.9
1,385,561	+		PP_1206	0.29	-0.1
1,385,562	-		PP_1206	0.29	-1.4
1,385,562	-		PP_1206	0.29	-0.9
1,385,588	+		PP_1206	0.31	-1.3
1,385,708	+		PP_1206	0.41	-2.7
1,385,709	-		PP_1206	0.41	-2.1
1,385,709	-		PP_1206	0.41	-1.5
1,385,709	-		PP_1206	0.41	-2.0
1,385,709	-		PP_1206	0.41	-0.4
1,385,709	-		PP_1206	0.41	+0.9
1,385,774	+		PP_1206	0.46	-1.6
1,385,774	+		PP_1206	0.46	-0.6
1,385,775	-		PP_1206	0.46	+0.6
1,385,777	+		PP_1206	0.46	-3.3
1,385,790	-		PP_1206	0.47	-0.0
1,385,808	-		PP_1206	0.49	+1.5
1,385,810	+		PP_1206	0.49	-2.0
1,385,811	-		PP_1206	0.49	-2.4
1,385,811	-		PP_1206	0.49	-1.7
1,385,843	+		PP_1206	0.52	-3.0
1,385,843	+		PP_1206	0.52	-3.3
1,385,844	-		PP_1206	0.52	-2.8
1,385,844	-		PP_1206	0.52	-1.5
1,386,320	+		PP_1206	0.89	-2.8
1,386,321	-		PP_1206	0.89	-1.0
1,386,321	-		PP_1206	0.89	-2.9
1,386,321	-		PP_1206	0.89	-0.9
1,386,509	+				-2.4
1,386,509	+				-2.1
1,386,513	+				-2.4
1,386,513	+				-2.4
1,386,513	+				-0.9
1,386,514	-				-0.4
1,386,514	-				-1.0
1,386,514	-				+0.1
1,386,514	-				+1.7
1,386,515	+				-2.8
1,386,516	-				+0.5
1,386,536	+				-2.4
1,386,537	-				-0.1
1,386,553	-				-0.6
1,386,584	+				-2.7
1,386,584	+				-2.3
1,386,585	-				+0.9
1,386,585	-				+0.4
1,386,586	+				-3.0
1,386,586	+				-2.5
1,386,624	+				-1.4
1,386,667	+				-2.4
1,386,668	-				+1.3
1,386,695	+				-0.9
1,386,707	-				-0.1
1,386,769	+				+0.1
1,386,769	+				-3.1
1,386,769	+				-0.9
1,386,770	-				+0.2
1,386,770	-				+0.4
1,386,961	+				-1.7
1,387,089	-				+1.8
1,387,089	-				-0.7
1,387,125	+				+0.6
1,387,125	+				-1.6
1,387,125	+				-1.2
1,387,126	-				-0.6
1,387,141	+				-3.4
1,387,141	+				-3.8
1,387,141	+				-1.6
1,387,141	+				-0.7
1,387,142	-				+0.1
1,387,142	-				+1.0
1,387,142	-				-0.2
1,387,142	-				+1.2
1,387,237	+		PP_1207	0.21	-2.4
1,387,238	-		PP_1207	0.22	+1.0
1,387,238	-		PP_1207	0.22	+0.1
1,387,238	-		PP_1207	0.22	-2.2
1,387,360	+		PP_1207	0.51	-0.8
1,387,360	+		PP_1207	0.51	-2.0
1,387,360	+				-0.5
1,387,361	-		PP_1207	0.51	+0.3
1,387,361	-		PP_1207	0.51	+0.0
1,387,387	-		PP_1207	0.57	+1.0