Strain Fitness in Pseudomonas putida KT2440 around PP_1128

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,291,492	+		PP_1127	0.25	+2.2
1,291,493	-		PP_1127	0.25	-0.1
1,291,493	-		PP_1127	0.25	-1.1
1,291,493	-		PP_1127	0.25	-0.5
1,291,493	-		PP_1127	0.25	-1.3
1,291,493	-		PP_1127	0.25	-0.8
1,291,603	+		PP_1127	0.34	+0.8
1,291,603	+		PP_1127	0.34	+0.9
1,291,603	+		PP_1127	0.34	-0.1
1,291,603	+		PP_1127	0.34	-0.1
1,291,603	+		PP_1127	0.34	+0.4
1,291,603	+		PP_1127	0.34	+1.5
1,291,603	+		PP_1127	0.34	+0.0
1,291,603	+		PP_1127	0.34	+1.3
1,291,604	-		PP_1127	0.34	-2.1
1,291,604	-		PP_1127	0.34	-1.8
1,291,926	+		PP_1127	0.62	+0.5
1,291,926	+		PP_1127	0.62	+0.9
1,292,032	+		PP_1127	0.72	+0.3
1,292,032	+		PP_1127	0.72	+0.0
1,292,032	+		PP_1127	0.72	+0.0
1,292,032	+		PP_1127	0.72	+0.3
1,292,032	+		PP_1127	0.72	+1.5
1,292,033	-		PP_1127	0.72	+0.1
1,292,033	-		PP_1127	0.72	-0.4
1,292,097	+		PP_1127	0.77	+0.5
1,292,097	+		PP_1127	0.77	+0.7
1,292,098	-		PP_1127	0.77	-0.2
1,292,098	-		PP_1127	0.77	-1.2
1,292,098	-		PP_1127	0.77	-0.6
1,292,098	-		PP_1127	0.77	-0.5
1,292,115	+		PP_1127	0.79	+1.9
1,292,115	+		PP_1127	0.79	+0.4
1,292,116	-		PP_1127	0.79	-1.8
1,292,296	+				+0.8
1,292,296	+				+1.2
1,292,296	+				+1.1
1,292,297	-				-1.8
1,292,330	+				+0.3
1,292,474	+				+0.2
1,292,475	-				-2.1
1,292,846	-		PP_1128	0.43	-1.8
1,292,846	-		PP_1128	0.43	-1.4
1,292,846	-		PP_1128	0.43	-1.5
1,292,846	-		PP_1128	0.43	-2.0
1,292,846	-		PP_1128	0.43	-1.7
1,292,945	+		PP_1128	0.53	-1.5
1,293,188	-		PP_1128	0.76	-1.5
1,293,308	+		PP_1128	0.88	-0.4
1,293,308	+		PP_1128	0.88	-1.5
1,293,401	+				-1.5
1,293,401	+				+0.3
1,293,401	+				+0.2
1,293,402	-				-1.4
1,293,472	+				-1.7
1,293,692	-		PP_1129	0.37	+1.4
1,294,141	-				+0.3
1,294,141	-				-1.1
1,294,189	+		PP_1130	0.16	-0.6
1,294,311	+		PP_1130	0.56	-0.0
1,294,311	+		PP_1130	0.56	+1.5
1,294,311	+		PP_1130	0.56	+0.5
1,294,312	-		PP_1130	0.57	-1.6
1,294,312	-		PP_1130	0.57	+1.7
1,294,312	-		PP_1130	0.57	+0.3
1,294,312	-		PP_1130	0.57	-0.3
1,294,312	-		PP_1130	0.57	-0.4
1,294,329	+		PP_1130	0.62	+1.2
1,294,329	+		PP_1130	0.62	+0.1
1,294,329	+		PP_1130	0.62	-0.7
1,294,330	-		PP_1130	0.62	-2.3
1,294,330	-		PP_1130	0.62	-0.0
1,294,365	+		PP_1130	0.74	+0.0
1,294,365	+		PP_1130	0.74	-0.4
1,294,366	-		PP_1130	0.74	-0.0
1,294,366	-		PP_1130	0.74	+0.5
1,294,376	+		PP_1130	0.77	-0.7
1,294,376	+		PP_1130	0.77	-0.0