Strain Fitness in Pseudomonas putida KT2440 around PP_1043

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,190,731	+		PP_1042	0.26	-1.1
1,190,842	+		PP_1042	0.38	+1.2
1,190,843	-		PP_1042	0.38	-1.6
1,190,847	-		PP_1042	0.38	-1.2
1,191,142	+		PP_1042	0.69	+0.6
1,191,142	+		PP_1042	0.69	-2.1
1,191,143	-		PP_1042	0.69	+0.4
1,191,143	-		PP_1042	0.69	+0.4
1,191,143	-		PP_1042	0.69	+0.3
1,191,396	-				+0.7
1,191,443	-				-3.1
1,191,460	+				-2.4
1,191,461	-				+0.7
1,191,679	-				+0.2
1,191,679	-				+1.0
1,191,680	+				+0.9
1,191,681	-				-0.5
1,191,742	-				+0.7
1,191,882	-		PP_1043	0.15	-1.4
1,192,169	+		PP_1043	0.29	-1.8
1,192,169	+		PP_1043	0.29	+0.8
1,192,171	+		PP_1043	0.29	+1.2
1,192,171	+		PP_1043	0.29	-2.1
1,192,171	+		PP_1043	0.29	+0.2
1,192,171	+		PP_1043	0.29	-0.5
1,192,171	+		PP_1043	0.29	+0.2
1,192,172	-		PP_1043	0.29	-0.1
1,192,172	-		PP_1043	0.29	+0.7
1,192,172	-		PP_1043	0.29	+1.1
1,192,283	+		PP_1043	0.34	+1.1
1,192,283	+		PP_1043	0.34	+1.5
1,192,284	-		PP_1043	0.34	-2.6
1,192,284	-		PP_1043	0.34	-0.8
1,192,342	+		PP_1043	0.37	+1.5
1,192,343	-		PP_1043	0.37	-0.4
1,192,343	-		PP_1043	0.37	+0.8
1,192,377	-		PP_1043	0.39	-0.6
1,192,377	-		PP_1043	0.39	+1.2
1,192,472	+		PP_1043	0.43	-1.4
1,192,472	+		PP_1043	0.43	-1.6
1,192,472	+		PP_1043	0.43	-0.6
1,192,473	-		PP_1043	0.43	-0.7
1,192,478	+		PP_1043	0.44	+1.0
1,192,479	-		PP_1043	0.44	+1.0
1,192,479	-		PP_1043	0.44	-0.6
1,192,505	+		PP_1043	0.45	-1.4
1,192,505	+		PP_1043	0.45	-0.7
1,192,505	+		PP_1043	0.45	+0.3
1,192,506	-		PP_1043	0.45	+0.3
1,192,628	+		PP_1043	0.51	+2.0
1,192,629	-		PP_1043	0.51	+0.2
1,192,629	-		PP_1043	0.51	+0.8
1,192,634	+		PP_1043	0.51	+1.4
1,192,635	-		PP_1043	0.51	+1.6
1,192,635	-		PP_1043	0.51	+1.4
1,192,635	-		PP_1043	0.51	-0.9
1,192,655	+		PP_1043	0.52	+0.9
1,192,656	-		PP_1043	0.52	+0.8
1,192,751	+		PP_1043	0.57	+1.3
1,192,751	+		PP_1043	0.57	+0.1
1,192,751	+		PP_1043	0.57	+0.3
1,192,752	-		PP_1043	0.57	-1.2
1,192,752	-		PP_1043	0.57	+1.4
1,192,850	+		PP_1043	0.61	-2.9
1,192,850	+		PP_1043	0.61	-0.5
1,192,850	+		PP_1043	0.61	-0.4
1,192,851	-		PP_1043	0.62	+0.8
1,192,851	-		PP_1043	0.62	-0.6
1,192,851	-		PP_1043	0.62	+0.2
1,192,851	-		PP_1043	0.62	+0.1
1,192,866	+		PP_1043	0.62	+1.3
1,192,922	+		PP_1043	0.65	-0.2
1,192,922	+		PP_1043	0.65	+0.9
1,192,923	-		PP_1043	0.65	+1.1
1,192,923	-		PP_1043	0.65	+0.0
1,193,050	+		PP_1043	0.71	-3.2
1,193,159	+		PP_1043	0.76	-2.5
1,193,159	+		PP_1043	0.76	-1.4
1,193,159	+		PP_1043	0.76	+0.6
1,193,333	+		PP_1043	0.85	-1.9
1,193,334	-		PP_1043	0.85	+2.0
1,193,334	-		PP_1043	0.85	+0.8
1,193,574	-				-0.0
1,193,694	-				-0.1
1,193,857	+				+0.9
1,194,001	-				+1.3
1,194,183	+		PP_1044	0.19	-0.8
1,194,500	+		PP_1044	0.39	-0.4
1,194,564	+		PP_1044	0.42	+0.3