Strain Fitness in Pseudomonas putida KT2440 around PP_0980

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,117,917	-				+1.8
1,117,980	+		PP_0978	0.18	-1.8
1,117,981	-		PP_0978	0.18	-1.3
1,118,167	+		PP_0978	0.69	-1.2
1,118,298	+				-0.8
1,118,320	+				-2.9
1,118,321	-				+0.3
1,118,608	+		PP_0979	0.75	+1.6
1,118,609	-		PP_0979	0.75	+0.5
1,118,609	-		PP_0979	0.75	-0.2
1,118,609	-		PP_0979	0.75	+0.8
1,118,695	+				-0.0
1,118,695	+				+0.7
1,118,695	+				-1.9
1,118,696	-				-0.4
1,118,790	+				-0.7
1,118,790	+				-1.3
1,118,790	+				-1.3
1,118,791	-				+1.0
1,118,887	-				+1.4
1,118,887	-				-1.6
1,119,073	+		PP_0980	0.21	-0.5
1,119,175	-		PP_0980	0.27	-0.1
1,119,393	+		PP_0980	0.42	-2.6
1,119,451	+		PP_0980	0.46	-2.5
1,119,451	+		PP_0980	0.46	-1.6
1,119,451	+		PP_0980	0.46	-2.9
1,119,452	-		PP_0980	0.46	-1.4
1,119,452	-		PP_0980	0.46	+0.6
1,119,454	+		PP_0980	0.46	+0.5
1,119,454	+		PP_0980	0.46	-2.7
1,119,455	-		PP_0980	0.46	-1.5
1,119,455	-		PP_0980	0.46	-1.8
1,119,504	+		PP_0980	0.49	-1.6
1,119,657	+		PP_0980	0.60	-1.2
1,119,843	+		PP_0980	0.72	-0.2
1,119,843	+		PP_0980	0.72	-2.8
1,119,844	-		PP_0980	0.72	-2.9
1,119,879	+		PP_0980	0.75	-1.6
1,119,880	-		PP_0980	0.75	-2.1
1,119,932	+		PP_0980	0.78	-2.2
1,120,073	+		PP_0980	0.88	-4.0
1,120,073	+		PP_0980	0.88	-1.7
1,120,073	+		PP_0980	0.88	-2.0
1,120,074	-		PP_0980	0.88	-2.6
1,120,097	-		PP_0980	0.89	-1.2
1,120,221	-				-1.0
1,120,244	+				-1.7
1,120,453	+				-0.1
1,120,453	+				-0.6
1,120,497	+				-1.3
1,120,497	+				+3.7
1,120,500	+				+1.2
1,120,500	+				+1.2
1,120,500	+				+0.0
1,120,500	+				+0.7
1,120,500	+				+2.3
1,120,500	+				-0.4
1,120,500	+				-0.8