Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0695 and PP_0696 are separated by 76 nucleotides PP_0696 and PP_0697 overlap by 4 nucleotides PP_0697 and PP_5455 are separated by 57 nucleotides PP_5455 and PP_0698 overlap by 61 nucleotides
PP_0695: PP_0695 - conserved protein of unknown function, at 808,023 to 809,357
_0695
PP_0696: PP_0696 - conserved protein of unknown function, at 809,434 to 810,309
_0696
PP_0697: PP_0697 - ribosomal-protein-S18-alanine N-acetyltransferase, at 810,306 to 810,761
_0697
PP_5455: PP_5455 - conserved exported protein of unknown function, at 810,819 to 811,394
_5455
PP_0698: PP_0698 - Transcriptional regulator, LysR family, at 811,334 to 812,251
_0698
Position (kb) 810
811 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 809.350 kb on + strand at 809.398 kb on + strand at 809.399 kb on - strand at 809.419 kb on + strand at 809.420 kb on - strand at 809.454 kb on - strand at 809.476 kb on + strand at 809.476 kb on + strand at 809.483 kb on + strand at 809.483 kb on + strand at 809.483 kb on + strand at 809.483 kb on + strand at 809.483 kb on + strand at 810.359 kb on - strand, within PP_0697 at 810.359 kb on - strand, within PP_0697 at 810.362 kb on + strand, within PP_0697 at 810.362 kb on + strand, within PP_0697 at 810.362 kb on + strand, within PP_0697 at 810.362 kb on + strand, within PP_0697 at 810.362 kb on + strand, within PP_0697 at 810.363 kb on - strand, within PP_0697 at 810.372 kb on + strand, within PP_0697 at 810.588 kb on + strand, within PP_0697 at 810.589 kb on - strand, within PP_0697 at 810.645 kb on + strand, within PP_0697 at 810.646 kb on - strand, within PP_0697 at 810.655 kb on - strand, within PP_0697 at 810.663 kb on + strand, within PP_0697 at 810.696 kb on + strand, within PP_0697 at 810.696 kb on + strand, within PP_0697 at 810.696 kb on + strand, within PP_0697 at 810.696 kb on + strand, within PP_0697 at 810.697 kb on - strand, within PP_0697 at 810.697 kb on - strand, within PP_0697 at 810.697 kb on - strand, within PP_0697 at 810.697 kb on - strand, within PP_0697 at 810.700 kb on - strand, within PP_0697 at 810.743 kb on + strand at 810.744 kb on - strand at 810.813 kb on + strand at 810.851 kb on + strand at 810.851 kb on + strand at 810.851 kb on + strand at 810.851 kb on + strand at 810.852 kb on - strand at 810.946 kb on + strand, within PP_5455 at 810.947 kb on - strand, within PP_5455 at 810.947 kb on - strand, within PP_5455 at 810.960 kb on + strand, within PP_5455 at 810.968 kb on - strand, within PP_5455 at 810.968 kb on - strand, within PP_5455 at 811.036 kb on + strand, within PP_5455 at 811.190 kb on + strand, within PP_5455 at 811.211 kb on + strand, within PP_5455 at 811.212 kb on - strand, within PP_5455 at 811.213 kb on + strand, within PP_5455 at 811.214 kb on - strand, within PP_5455 at 811.379 kb on + strand at 811.379 kb on + strand at 811.379 kb on + strand at 811.379 kb on + strand at 811.485 kb on + strand, within PP_0698 at 811.611 kb on + strand, within PP_0698 at 811.612 kb on - strand, within PP_0698
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 809,350 + -1.2 809,398 + +0.4 809,399 - -0.5 809,419 + -0.3 809,420 - +0.9 809,454 - -0.7 809,476 + +0.2 809,476 + +0.0 809,483 + -0.2 809,483 + +1.7 809,483 + -0.3 809,483 + +0.9 809,483 + +0.7 810,359 - PP_0697 0.12 -2.1 810,359 - PP_0697 0.12 -0.1 810,362 + PP_0697 0.12 -0.4 810,362 + PP_0697 0.12 -1.0 810,362 + PP_0697 0.12 -2.7 810,362 + PP_0697 0.12 -3.2 810,362 + PP_0697 0.12 +0.2 810,363 - PP_0697 0.12 -3.1 810,372 + PP_0697 0.14 -2.0 810,588 + PP_0697 0.62 -1.7 810,589 - PP_0697 0.62 -3.6 810,645 + PP_0697 0.74 -1.8 810,646 - PP_0697 0.75 -0.3 810,655 - PP_0697 0.77 -2.2 810,663 + PP_0697 0.78 -3.3 810,696 + PP_0697 0.86 -2.1 810,696 + PP_0697 0.86 -4.5 810,696 + PP_0697 0.86 -1.1 810,696 + PP_0697 0.86 -0.4 810,697 - PP_0697 0.86 -2.3 810,697 - PP_0697 0.86 -1.0 810,697 - PP_0697 0.86 -2.7 810,697 - PP_0697 0.86 -3.1 810,700 - PP_0697 0.86 -3.6 810,743 + +1.5 810,744 - +0.3 810,813 + +0.8 810,851 + -0.5 810,851 + -0.3 810,851 + -0.2 810,851 + -0.8 810,852 - +0.2 810,946 + PP_5455 0.22 +0.4 810,947 - PP_5455 0.22 -2.0 810,947 - PP_5455 0.22 -0.0 810,960 + PP_5455 0.24 -0.9 810,968 - PP_5455 0.26 +0.9 810,968 - PP_5455 0.26 -0.3 811,036 + PP_5455 0.38 +0.9 811,190 + PP_5455 0.64 +0.6 811,211 + PP_5455 0.68 +0.3 811,212 - PP_5455 0.68 +0.3 811,213 + PP_5455 0.68 +0.3 811,214 - PP_5455 0.69 -0.1 811,379 + +0.9 811,379 + +0.4 811,379 + -0.8 811,379 + +0.2 811,485 + PP_0698 0.16 -0.4 811,611 + PP_0698 0.30 -3.4 811,612 - PP_0698 0.30 -0.7
Or see this region's nucleotide sequence