Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5453 and PP_0652 are separated by 64 nucleotides PP_0652 and PP_0653 overlap by 4 nucleotides PP_0653 and PP_0654 are separated by 151 nucleotides
PP_5453: PP_5453 - conserved protein of unknown function, at 759,862 to 760,089
_5453
PP_0652: PP_0652 - Gluconate transporter, at 760,154 to 761,539
_0652
PP_0653: PP_0653 - conserved protein of unknown function, at 761,536 to 761,817
_0653
PP_0654: PP_0654 - putative malate dehydrogenase, at 761,969 to 762,901
_0654
Position (kb) 760
761
762 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 759.202 kb on + strand at 759.226 kb on + strand at 759.276 kb on + strand at 759.277 kb on - strand at 759.288 kb on + strand at 759.288 kb on + strand at 759.288 kb on + strand at 759.289 kb on - strand at 759.294 kb on + strand at 759.294 kb on + strand at 759.295 kb on - strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.311 kb on - strand at 759.313 kb on + strand at 759.313 kb on + strand at 759.374 kb on + strand at 759.375 kb on - strand at 759.375 kb on - strand at 759.396 kb on + strand at 759.419 kb on + strand at 759.434 kb on - strand at 759.607 kb on + strand at 759.608 kb on - strand at 759.608 kb on - strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.760 kb on - strand at 759.810 kb on + strand at 759.811 kb on - strand at 759.811 kb on - strand at 760.055 kb on + strand, within PP_5453 at 760.056 kb on - strand, within PP_5453 at 760.056 kb on - strand, within PP_5453 at 760.087 kb on + strand at 760.088 kb on - strand at 760.088 kb on - strand at 760.088 kb on - strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.306 kb on - strand, within PP_0652 at 760.407 kb on - strand, within PP_0652 at 760.433 kb on - strand, within PP_0652 at 760.433 kb on - strand, within PP_0652 at 760.520 kb on + strand, within PP_0652 at 760.521 kb on - strand, within PP_0652 at 760.920 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.969 kb on - strand, within PP_0652 at 761.037 kb on - strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.091 kb on + strand, within PP_0652 at 761.092 kb on - strand, within PP_0652 at 761.145 kb on - strand, within PP_0652 at 761.398 kb on + strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.399 kb on - strand, within PP_0652 at 761.513 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.516 kb on + strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.517 kb on - strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.522 kb on + strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.523 kb on - strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.524 kb on + strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.525 kb on - strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.528 kb on + strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.529 kb on - strand at 761.645 kb on - strand, within PP_0653 at 761.809 kb on + strand at 761.821 kb on + strand at 761.838 kb on + strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.916 kb on - strand at 761.926 kb on - strand at 761.926 kb on - strand at 761.926 kb on - strand at 761.928 kb on - strand at 761.928 kb on - strand at 761.928 kb on - strand at 761.944 kb on - strand at 761.944 kb on - strand at 762.140 kb on - strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.243 kb on + strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.244 kb on - strand, within PP_0654 at 762.250 kb on + strand, within PP_0654 at 762.250 kb on + strand, within PP_0654 at 762.251 kb on - strand, within PP_0654 at 762.251 kb on - strand, within PP_0654 at 762.350 kb on + strand, within PP_0654 at 762.351 kb on - strand, within PP_0654 at 762.469 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654 at 762.524 kb on + strand, within PP_0654
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 759,202 + -3.9 759,226 + -1.5 759,276 + +0.8 759,277 - -0.8 759,288 + +0.1 759,288 + -0.1 759,288 + +0.7 759,289 - -2.3 759,294 + +0.8 759,294 + -2.5 759,295 - +0.4 759,310 + -1.2 759,310 + -0.6 759,310 + +0.6 759,310 + -0.5 759,311 - +1.1 759,313 + -0.1 759,313 + +0.1 759,374 + -0.0 759,375 - -0.2 759,375 - -0.6 759,396 + -0.3 759,419 + -1.4 759,434 - -2.9 759,607 + -2.4 759,608 - +1.2 759,608 - -0.0 759,675 + +0.9 759,675 + -0.6 759,675 + -0.3 759,675 + +0.8 759,676 - +0.7 759,676 - +1.2 759,676 - -0.5 759,676 - -0.3 759,676 - +0.2 759,676 - -0.4 759,760 - +1.1 759,810 + +0.8 759,811 - -0.7 759,811 - -1.8 760,055 + PP_5453 0.85 +0.5 760,056 - PP_5453 0.85 +1.1 760,056 - PP_5453 0.85 -1.5 760,087 + +0.2 760,088 - +0.4 760,088 - +0.1 760,088 - +0.7 760,160 + -1.8 760,160 + -0.3 760,160 + -0.2 760,160 + +1.5 760,160 + +1.8 760,160 + -0.9 760,161 - +1.1 760,161 - -2.1 760,161 - +0.1 760,161 - +0.1 760,161 - +0.0 760,305 + PP_0652 0.11 +1.5 760,305 + PP_0652 0.11 +0.9 760,305 + PP_0652 0.11 +0.5 760,305 + PP_0652 0.11 +1.1 760,305 + PP_0652 0.11 +0.4 760,306 - PP_0652 0.11 +0.0 760,407 - PP_0652 0.18 +1.0 760,433 - PP_0652 0.20 -1.4 760,433 - PP_0652 0.20 +0.9 760,520 + PP_0652 0.26 +1.7 760,521 - PP_0652 0.26 -0.1 760,920 + PP_0652 0.55 +1.4 760,968 + PP_0652 0.59 +1.6 760,968 + PP_0652 0.59 -1.1 760,968 + PP_0652 0.59 +0.1 760,969 - PP_0652 0.59 +0.4 761,037 - PP_0652 0.64 +0.9 761,081 + PP_0652 0.67 +0.9 761,081 + PP_0652 0.67 +0.8 761,081 + PP_0652 0.67 +0.6 761,081 + PP_0652 0.67 +1.9 761,081 + PP_0652 0.67 +1.5 761,081 + PP_0652 0.67 -2.2 761,081 + PP_0652 0.67 -0.4 761,082 - PP_0652 0.67 +0.5 761,082 - PP_0652 0.67 -0.6 761,082 - PP_0652 0.67 -0.4 761,085 + PP_0652 0.67 -0.4 761,085 + PP_0652 0.67 +0.9 761,085 + PP_0652 0.67 +0.3 761,085 + PP_0652 0.67 -0.8 761,085 + PP_0652 0.67 -1.0 761,085 + PP_0652 0.67 +0.3 761,085 + PP_0652 0.67 -0.1 761,085 + PP_0652 0.67 -1.0 761,085 + PP_0652 0.67 -0.5 761,085 + PP_0652 0.67 +0.7 761,085 + PP_0652 0.67 -0.8 761,085 + PP_0652 0.67 +1.3 761,086 - PP_0652 0.67 +0.9 761,086 - PP_0652 0.67 +0.7 761,086 - PP_0652 0.67 +1.4 761,086 - PP_0652 0.67 +1.1 761,086 - PP_0652 0.67 +0.2 761,086 - PP_0652 0.67 +1.1 761,086 - PP_0652 0.67 +0.3 761,086 - PP_0652 0.67 +1.2 761,086 - PP_0652 0.67 -1.2 761,086 - PP_0652 0.67 -1.6 761,091 + PP_0652 0.68 +0.3 761,092 - PP_0652 0.68 +0.9 761,145 - PP_0652 0.72 +0.1 761,398 + PP_0652 0.90 -0.2 761,399 - PP_0652 0.90 -0.3 761,399 - PP_0652 0.90 -1.5 761,399 - PP_0652 0.90 +0.8 761,513 + -3.1 761,516 + -0.8 761,516 + +0.2 761,516 + -0.1 761,516 + +0.6 761,516 + -0.2 761,516 + +0.2 761,516 + -0.1 761,517 - -2.2 761,517 - -0.3 761,517 - +0.6 761,517 - -0.9 761,517 - +1.1 761,522 + +1.8 761,522 + +1.0 761,522 + +0.1 761,522 + -0.8 761,522 + +0.7 761,522 + +0.5 761,522 + -1.3 761,522 + -0.1 761,522 + -0.4 761,522 + +1.8 761,522 + -2.2 761,522 + -0.1 761,522 + +0.4 761,523 - -1.1 761,523 - +0.2 761,523 - +0.4 761,523 - -0.2 761,523 - +0.6 761,523 - -4.1 761,523 - +0.8 761,523 - +1.2 761,523 - +0.6 761,523 - +1.0 761,523 - +1.1 761,523 - +0.3 761,523 - +0.5 761,523 - -0.3 761,524 + +0.9 761,524 + +0.1 761,524 + +0.8 761,524 + -0.0 761,525 - -1.6 761,525 - +1.4 761,525 - -0.9 761,525 - -0.4 761,525 - -0.1 761,525 - -1.8 761,528 + -0.8 761,528 + -0.4 761,528 + -0.0 761,528 + -0.3 761,528 + -0.7 761,528 + +0.3 761,528 + -0.1 761,529 - -0.1 761,529 - -0.9 761,529 - -1.0 761,529 - +0.3 761,529 - -1.3 761,645 - PP_0653 0.39 +0.1 761,809 + +0.6 761,821 + -0.3 761,838 + -2.1 761,916 - -0.9 761,916 - -1.6 761,916 - +0.9 761,916 - +1.0 761,916 - +0.5 761,916 - -0.1 761,926 - +2.3 761,926 - -0.5 761,926 - +1.3 761,928 - -1.1 761,928 - -1.1 761,928 - -1.1 761,944 - +0.3 761,944 - -1.3 762,140 - PP_0654 0.18 +1.2 762,243 + PP_0654 0.29 +1.8 762,243 + PP_0654 0.29 +0.2 762,243 + PP_0654 0.29 +0.0 762,243 + PP_0654 0.29 -1.2 762,243 + PP_0654 0.29 +0.3 762,244 - PP_0654 0.29 +0.5 762,244 - PP_0654 0.29 -2.3 762,244 - PP_0654 0.29 +1.3 762,244 - PP_0654 0.29 -1.0 762,244 - PP_0654 0.29 -0.4 762,244 - PP_0654 0.29 +0.5 762,244 - PP_0654 0.29 +0.4 762,250 + PP_0654 0.30 -1.2 762,250 + PP_0654 0.30 +1.7 762,251 - PP_0654 0.30 -1.5 762,251 - PP_0654 0.30 +0.8 762,350 + PP_0654 0.41 -0.6 762,351 - PP_0654 0.41 +0.3 762,469 + PP_0654 0.54 -0.3 762,524 + PP_0654 0.59 +0.1 762,524 + PP_0654 0.59 +0.8 762,524 + PP_0654 0.59 +0.6
Or see this region's nucleotide sequence