Strain Fitness in Pseudomonas putida KT2440 around PP_0214

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0213 and PP_0214 are separated by 182 nucleotidesPP_0214 and PP_0215 are separated by 138 nucleotides PP_0213: PP_0213 - succinate-semialdehyde dehydrogenase (NADP+), at 263,250 to 264,692 _0213 PP_0214: PP_0214 - 4-aminobutyrate aminotransferase, at 264,875 to 266,152 _0214 PP_0215: PP_0215 - Response regulator, at 266,291 to 267,550 _0215 Position (kb) 264 265 266 267Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 264.131 kb on + strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.135 kb on + strand, within PP_0213at 264.135 kb on + strand, within PP_0213at 264.136 kb on - strand, within PP_0213at 264.493 kb on - strand, within PP_0213at 264.605 kb on + strandat 264.642 kb on + strandat 264.643 kb on - strandat 264.643 kb on - strandat 264.657 kb on + strandat 264.658 kb on - strandat 264.693 kb on + strandat 264.694 kb on - strandat 264.694 kb on - strandat 264.701 kb on + strandat 264.702 kb on - strandat 264.710 kb on + strandat 264.710 kb on + strandat 264.711 kb on - strandat 264.711 kb on - strandat 264.711 kb on - strandat 264.711 kb on - strandat 264.756 kb on + strandat 264.766 kb on + strandat 264.767 kb on - strandat 264.806 kb on + strandat 264.806 kb on + strandat 264.806 kb on + strandat 264.874 kb on + strandat 264.874 kb on + strandat 264.874 kb on + strandat 264.874 kb on + strandat 264.875 kb on - strandat 264.913 kb on - strandat 265.062 kb on + strand, within PP_0214at 265.062 kb on + strand, within PP_0214at 265.124 kb on + strand, within PP_0214at 265.133 kb on + strand, within PP_0214at 265.133 kb on + strand, within PP_0214at 265.134 kb on - strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.340 kb on + strand, within PP_0214at 265.341 kb on - strand, within PP_0214at 265.408 kb on + strand, within PP_0214at 265.500 kb on + strand, within PP_0214at 265.599 kb on + strand, within PP_0214at 265.731 kb on - strand, within PP_0214at 265.766 kb on - strand, within PP_0214at 265.769 kb on + strand, within PP_0214at 265.770 kb on - strand, within PP_0214at 265.902 kb on - strand, within PP_0214at 265.902 kb on - strand, within PP_0214at 266.052 kb on - strandat 266.052 kb on - strandat 266.181 kb on - strandat 266.206 kb on - strandat 266.206 kb on - strandat 266.221 kb on - strandat 266.283 kb on - strandat 266.283 kb on - strandat 266.283 kb on - strandat 266.322 kb on + strandat 266.322 kb on + strandat 266.350 kb on - strandat 266.406 kb on + strandat 266.407 kb on - strandat 266.555 kb on - strand, within PP_0215at 266.610 kb on - strand, within PP_0215at 266.610 kb on - strand, within PP_0215at 266.732 kb on + strand, within PP_0215at 266.733 kb on - strand, within PP_0215at 266.896 kb on + strand, within PP_0215at 266.896 kb on + strand, within PP_0215at 267.080 kb on + strand, within PP_0215at 267.080 kb on + strand, within PP_0215at 267.128 kb on + strand, within PP_0215at 267.128 kb on + strand, within PP_0215at 267.128 kb on + strand, within PP_0215at 267.129 kb on - strand, within PP_0215

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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264,131 + PP_0213 0.61 +0.2
264,131 + PP_0213 0.61 -1.4
264,131 + PP_0213 0.61 +0.8
264,131 + PP_0213 0.61 +0.8
264,132 - PP_0213 0.61 -1.0
264,132 - PP_0213 0.61 -1.3
264,132 - PP_0213 0.61 -0.5
264,132 - PP_0213 0.61 -0.6
264,135 + PP_0213 0.61 -0.0
264,135 + PP_0213 0.61 +1.1
264,136 - PP_0213 0.61 -0.3
264,493 - PP_0213 0.86 -2.4
264,605 + -1.7
264,642 + +0.3
264,643 - -2.7
264,643 - -2.5
264,657 + +0.8
264,658 - -3.6
264,693 + +1.1
264,694 - -1.1
264,694 - -1.4
264,701 + +0.6
264,702 - -2.1
264,710 + +1.2
264,710 + +0.5
264,711 - -2.3
264,711 - -2.0
264,711 - -1.6
264,711 - -0.5
264,756 + +1.8
264,766 + +2.3
264,767 - -0.5
264,806 + +1.4
264,806 + +0.6
264,806 + +0.5
264,874 + -1.7
264,874 + -0.7
264,874 + -3.1
264,874 + -3.0
264,875 - -1.1
264,913 - -4.0
265,062 + PP_0214 0.15 -3.2
265,062 + PP_0214 0.15 -2.6
265,124 + PP_0214 0.19 +1.1
265,133 + PP_0214 0.20 -2.0
265,133 + PP_0214 0.20 -3.6
265,134 - PP_0214 0.20 +0.4
265,137 + PP_0214 0.21 -2.8
265,137 + PP_0214 0.21 -2.3
265,137 + PP_0214 0.21 -1.0
265,137 + PP_0214 0.21 -3.5
265,138 - PP_0214 0.21 -2.2
265,138 - PP_0214 0.21 -1.4
265,138 - PP_0214 0.21 -1.8
265,138 - PP_0214 0.21 -1.8
265,138 - PP_0214 0.21 -2.6
265,300 + PP_0214 0.33 -1.2
265,300 + PP_0214 0.33 -1.0
265,300 + PP_0214 0.33 -0.3
265,340 + PP_0214 0.36 +1.1
265,341 - PP_0214 0.36 -2.7
265,408 + PP_0214 0.42 -1.1
265,500 + PP_0214 0.49 +0.9
265,599 + PP_0214 0.57 -0.9
265,731 - PP_0214 0.67 -3.7
265,766 - PP_0214 0.70 -1.5
265,769 + PP_0214 0.70 -2.5
265,770 - PP_0214 0.70 -2.9
265,902 - PP_0214 0.80 -1.8
265,902 - PP_0214 0.80 -2.1
266,052 - -0.7
266,052 - -2.5
266,181 - +0.5
266,206 - -0.8
266,206 - -0.3
266,221 - +0.6
266,283 - +0.2
266,283 - +0.8
266,283 - +0.3
266,322 + +0.1
266,322 + -1.8
266,350 - -1.2
266,406 + -1.4
266,407 - +1.5
266,555 - PP_0215 0.21 +0.0
266,610 - PP_0215 0.25 -2.1
266,610 - PP_0215 0.25 +0.2
266,732 + PP_0215 0.35 -0.5
266,733 - PP_0215 0.35 -1.0
266,896 + PP_0215 0.48 -1.2
266,896 + PP_0215 0.48 -0.4
267,080 + PP_0215 0.63 +0.7
267,080 + PP_0215 0.63 -0.9
267,128 + PP_0215 0.66 -1.2
267,128 + PP_0215 0.66 +0.4
267,128 + PP_0215 0.66 -1.9
267,129 - PP_0215 0.67 +1.5

Or see this region's nucleotide sequence