Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0194 and PP_0195 overlap by 22 nucleotides PP_0195 and PP_0196 are separated by 50 nucleotides PP_0196 and PP_0197 overlap by 1 nucleotides PP_0197 and PP_0198 are separated by 99 nucleotides
PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314
_0194
PP_0195: PP_0195 - conserved protein of unknown function, at 245,293 to 245,772
_0195
PP_0196: PP_0196 - putative of ABC superfamily informational factor: ATP-binding components, at 245,823 to 247,733
_0196
PP_0197: PP_0197 - conserved protein of unknown function, at 247,733 to 248,320
_0197
PP_0198: PP_0198 - putative transporter, at 248,420 to 249,052
_0198
Position (kb) 245
246
247
248 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 245.053 kb on + strand, within PP_0194 at 245.629 kb on + strand, within PP_0195 at 245.630 kb on - strand, within PP_0195 at 245.735 kb on + strand at 245.735 kb on + strand at 245.735 kb on + strand at 245.736 kb on - strand at 245.807 kb on - strand at 245.848 kb on + strand at 245.849 kb on - strand at 245.849 kb on - strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.873 kb on - strand at 245.873 kb on - strand at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.070 kb on - strand, within PP_0196 at 246.070 kb on - strand, within PP_0196 at 246.190 kb on - strand, within PP_0196 at 246.190 kb on - strand, within PP_0196 at 246.190 kb on - strand at 246.192 kb on - strand, within PP_0196 at 246.502 kb on - strand, within PP_0196 at 246.567 kb on + strand, within PP_0196 at 246.567 kb on + strand, within PP_0196 at 246.607 kb on - strand, within PP_0196 at 246.607 kb on - strand, within PP_0196 at 246.842 kb on + strand, within PP_0196 at 246.842 kb on + strand, within PP_0196 at 246.952 kb on + strand, within PP_0196 at 246.957 kb on + strand, within PP_0196 at 246.957 kb on + strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 246.958 kb on - strand, within PP_0196 at 247.365 kb on + strand, within PP_0196 at 247.366 kb on - strand, within PP_0196 at 247.366 kb on - strand, within PP_0196 at 247.366 kb on - strand, within PP_0196 at 247.412 kb on + strand, within PP_0196 at 247.587 kb on + strand at 247.835 kb on - strand, within PP_0197 at 248.165 kb on - strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.233 kb on + strand, within PP_0197 at 248.234 kb on - strand, within PP_0197 at 248.234 kb on - strand, within PP_0197 at 248.281 kb on - strand at 248.380 kb on - strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.433 kb on + strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.434 kb on - strand at 248.672 kb on + strand, within PP_0198 at 248.681 kb on + strand, within PP_0198 at 248.681 kb on + strand, within PP_0198 at 248.682 kb on - strand, within PP_0198
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 245,053 + PP_0194 0.74 +2.4 245,629 + PP_0195 0.70 +1.2 245,630 - PP_0195 0.70 +1.2 245,735 + +1.3 245,735 + +1.6 245,735 + +0.8 245,736 - +0.8 245,807 - -0.3 245,848 + +1.6 245,849 - +0.0 245,849 - +2.2 245,872 + +2.7 245,872 + +1.7 245,872 + +1.6 245,872 + +1.1 245,873 - -0.7 245,873 - +2.8 246,069 + PP_0196 0.13 +0.8 246,069 + PP_0196 0.13 -0.2 246,069 + PP_0196 0.13 +1.4 246,069 + PP_0196 0.13 +1.9 246,069 + PP_0196 0.13 +0.8 246,070 - PP_0196 0.13 +0.8 246,070 - PP_0196 0.13 +1.1 246,190 - PP_0196 0.19 -0.1 246,190 - PP_0196 0.19 -1.0 246,190 - -0.1 246,192 - PP_0196 0.19 -0.4 246,502 - PP_0196 0.36 +0.4 246,567 + PP_0196 0.39 +1.6 246,567 + PP_0196 0.39 -0.0 246,607 - PP_0196 0.41 +1.3 246,607 - PP_0196 0.41 +1.1 246,842 + PP_0196 0.53 -0.6 246,842 + PP_0196 0.53 +1.3 246,952 + PP_0196 0.59 +1.3 246,957 + PP_0196 0.59 +1.4 246,957 + PP_0196 0.59 +0.9 246,958 - PP_0196 0.59 +0.8 246,958 - PP_0196 0.59 +0.6 246,958 - PP_0196 0.59 +1.2 246,958 - PP_0196 0.59 +0.8 246,958 - PP_0196 0.59 +1.7 247,365 + PP_0196 0.81 +0.2 247,366 - PP_0196 0.81 +0.8 247,366 - PP_0196 0.81 -0.5 247,366 - PP_0196 0.81 +0.6 247,412 + PP_0196 0.83 +0.3 247,587 + +1.9 247,835 - PP_0197 0.17 -1.6 248,165 - PP_0197 0.73 -0.4 248,233 + PP_0197 0.85 +0.2 248,233 + PP_0197 0.85 -0.1 248,233 + PP_0197 0.85 -1.1 248,233 + PP_0197 0.85 +1.5 248,234 - PP_0197 0.85 +0.9 248,234 - PP_0197 0.85 -0.2 248,281 - +0.9 248,380 - -0.2 248,433 + +0.6 248,433 + +0.0 248,433 + +0.9 248,433 + -2.2 248,433 + +1.1 248,434 - +0.3 248,434 - +0.3 248,434 - -1.6 248,434 - -1.9 248,672 + PP_0198 0.40 -0.1 248,681 + PP_0198 0.41 +0.4 248,681 + PP_0198 0.41 -2.0 248,682 - PP_0198 0.41 -1.5
Or see this region's nucleotide sequence