Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0189 and PP_0190 are separated by 222 nucleotides PP_0190 and PP_0191 are separated by 231 nucleotides PP_0191 and PP_0192 are separated by 8 nucleotides PP_0192 and PP_0194 are separated by 154 nucleotides
PP_0189: PP_0189 - putative heme biosynthesis protein, at 240,830 to 242,068
_0189
PP_0190: PP_0190 - putative disulfide bond formation protein B, at 242,291 to 242,797
_0190
PP_0191: PP_0191 - Transcriptional regulatory protein AlgQ, at 243,029 to 243,499
_0191
PP_0192: PP_0192 - putative FKBP-type 25 kDa peptidyl-prolyl cis-trans isomerase, at 243,508 to 244,170
_0192
PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314
_0194
Position (kb) 243
244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 242.112 kb on + strand at 242.117 kb on + strand at 242.166 kb on + strand at 242.173 kb on + strand at 242.174 kb on - strand at 242.349 kb on + strand, within PP_0190 at 242.349 kb on + strand, within PP_0190 at 242.350 kb on - strand, within PP_0190 at 242.350 kb on - strand, within PP_0190 at 242.496 kb on - strand at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.587 kb on - strand, within PP_0190 at 242.768 kb on + strand at 242.840 kb on - strand at 242.840 kb on - strand at 242.840 kb on - strand at 242.847 kb on + strand at 242.850 kb on + strand at 242.860 kb on + strand at 242.880 kb on + strand at 242.880 kb on + strand at 242.907 kb on + strand at 242.908 kb on - strand at 242.924 kb on + strand at 243.006 kb on + strand at 243.037 kb on + strand at 243.038 kb on - strand at 243.203 kb on + strand, within PP_0191 at 243.203 kb on + strand, within PP_0191 at 243.319 kb on + strand, within PP_0191 at 243.319 kb on + strand, within PP_0191 at 243.554 kb on + strand at 243.554 kb on + strand at 243.554 kb on + strand at 243.555 kb on - strand at 243.590 kb on + strand, within PP_0192 at 243.590 kb on + strand, within PP_0192 at 243.610 kb on + strand, within PP_0192 at 243.611 kb on - strand, within PP_0192 at 243.743 kb on + strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.744 kb on - strand, within PP_0192 at 243.807 kb on - strand, within PP_0192 at 243.824 kb on - strand, within PP_0192 at 243.824 kb on - strand, within PP_0192 at 243.839 kb on + strand, within PP_0192 at 243.839 kb on + strand, within PP_0192 at 243.856 kb on - strand, within PP_0192 at 243.978 kb on - strand, within PP_0192 at 244.067 kb on + strand, within PP_0192 at 244.068 kb on - strand, within PP_0192 at 244.136 kb on + strand at 244.137 kb on - strand at 244.162 kb on + strand at 244.187 kb on + strand at 244.187 kb on + strand at 244.188 kb on - strand at 244.188 kb on - strand at 244.188 kb on - strand at 244.210 kb on + strand at 244.242 kb on - strand at 244.249 kb on - strand at 244.287 kb on + strand at 244.287 kb on + strand at 244.287 kb on + strand at 244.287 kb on + strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.288 kb on - strand at 244.290 kb on + strand at 244.290 kb on + strand at 244.290 kb on + strand at 244.290 kb on + strand at 244.291 kb on - strand at 244.291 kb on - strand at 244.319 kb on + strand at 244.347 kb on + strand at 244.351 kb on + strand at 244.352 kb on - strand at 244.359 kb on + strand at 244.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 242,112 + +1.2 242,117 + -1.3 242,166 + +1.8 242,173 + +0.4 242,174 - +0.3 242,349 + PP_0190 0.11 -1.2 242,349 + PP_0190 0.11 -1.3 242,350 - PP_0190 0.12 +0.6 242,350 - PP_0190 0.12 +1.0 242,496 - +0.3 242,587 - PP_0190 0.58 +1.9 242,587 - PP_0190 0.58 +0.4 242,587 - PP_0190 0.58 +0.2 242,587 - PP_0190 0.58 +0.3 242,587 - PP_0190 0.58 -0.1 242,768 + +0.3 242,840 - +0.9 242,840 - +2.2 242,840 - +1.0 242,847 + -3.7 242,850 + +0.3 242,860 + +0.1 242,880 + +1.0 242,880 + -3.1 242,907 + +1.9 242,908 - +0.2 242,924 + +0.9 243,006 + -1.2 243,037 + +0.4 243,038 - +1.9 243,203 + PP_0191 0.37 +1.6 243,203 + PP_0191 0.37 +0.8 243,319 + PP_0191 0.62 +1.5 243,319 + PP_0191 0.62 +1.5 243,554 + +0.1 243,554 + +0.5 243,554 + +1.5 243,555 - +0.2 243,590 + PP_0192 0.12 -0.1 243,590 + PP_0192 0.12 +1.3 243,610 + PP_0192 0.15 +0.9 243,611 - PP_0192 0.16 +1.3 243,743 + PP_0192 0.35 +0.8 243,744 - PP_0192 0.36 +1.6 243,744 - PP_0192 0.36 +1.3 243,744 - PP_0192 0.36 +1.4 243,807 - PP_0192 0.45 +1.8 243,824 - PP_0192 0.48 +0.6 243,824 - PP_0192 0.48 +3.3 243,839 + PP_0192 0.50 -0.0 243,839 + PP_0192 0.50 -0.0 243,856 - PP_0192 0.52 +1.8 243,978 - PP_0192 0.71 -0.9 244,067 + PP_0192 0.84 -0.1 244,068 - PP_0192 0.84 -0.0 244,136 + -1.1 244,137 - +1.1 244,162 + +0.2 244,187 + +0.1 244,187 + +0.6 244,188 - +1.9 244,188 - +1.4 244,188 - +1.5 244,210 + +0.3 244,242 - +0.4 244,249 - +0.0 244,287 + -2.2 244,287 + -0.0 244,287 + +0.6 244,287 + +1.3 244,288 - +2.4 244,288 - -0.2 244,288 - +0.9 244,288 - -0.7 244,288 - +1.4 244,290 + -0.6 244,290 + -1.6 244,290 + +0.7 244,290 + -0.1 244,291 - +1.2 244,291 - +0.3 244,319 + +0.6 244,347 + -1.8 244,351 + -0.2 244,352 - +1.0 244,359 + +0.4 244,360 - -0.3
Or see this region's nucleotide sequence