Strain Fitness in Pseudomonas putida KT2440 around PP_0158

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0157 and PP_0158 are separated by 160 nucleotidesPP_0158 and PP_0159 are separated by 13 nucleotides PP_0157: PP_0157 - transcriptional activator of gcdH, LysR family, at 167,326 to 168,243 _0157 PP_0158: PP_0158 - glutaryl-CoA dehydrogenase, at 168,404 to 169,585 _0158 PP_0159: PP_0159 - putative CoA-transferase family III, at 169,599 to 170,819 _0159 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 167.441 kb on + strand, within PP_0157at 167.441 kb on + strand, within PP_0157at 167.442 kb on - strand, within PP_0157at 167.442 kb on - strand, within PP_0157at 167.442 kb on - strand, within PP_0157at 167.445 kb on - strand, within PP_0157at 167.445 kb on - strand, within PP_0157at 167.445 kb on - strand, within PP_0157at 167.458 kb on - strand, within PP_0157at 167.476 kb on - strand, within PP_0157at 167.527 kb on + strand, within PP_0157at 167.528 kb on - strand, within PP_0157at 167.578 kb on + strand, within PP_0157at 167.578 kb on + strand, within PP_0157at 167.578 kb on + strand, within PP_0157at 167.579 kb on - strand, within PP_0157at 167.579 kb on - strand, within PP_0157at 167.585 kb on + strand, within PP_0157at 167.586 kb on - strand, within PP_0157at 167.807 kb on + strand, within PP_0157at 167.808 kb on - strand, within PP_0157at 167.808 kb on - strand, within PP_0157at 167.827 kb on - strand, within PP_0157at 167.827 kb on - strand, within PP_0157at 167.914 kb on + strand, within PP_0157at 167.915 kb on - strand, within PP_0157at 167.994 kb on + strand, within PP_0157at 167.994 kb on + strand, within PP_0157at 167.995 kb on - strand, within PP_0157at 168.039 kb on - strand, within PP_0157at 168.099 kb on + strand, within PP_0157at 168.174 kb on + strandat 168.245 kb on + strandat 168.262 kb on + strandat 168.263 kb on - strandat 168.263 kb on - strandat 168.263 kb on - strandat 168.263 kb on - strandat 168.274 kb on + strandat 168.275 kb on - strandat 168.275 kb on - strandat 168.358 kb on - strandat 168.386 kb on + strandat 168.386 kb on + strandat 168.621 kb on - strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.641 kb on + strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.642 kb on - strand, within PP_0158at 168.650 kb on + strand, within PP_0158at 168.650 kb on + strand, within PP_0158at 168.650 kb on + strand, within PP_0158at 168.651 kb on - strand, within PP_0158at 168.658 kb on + strand, within PP_0158at 168.773 kb on + strand, within PP_0158at 168.829 kb on + strand, within PP_0158at 168.830 kb on - strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.160 kb on + strand, within PP_0158at 169.161 kb on - strand, within PP_0158at 169.165 kb on + strand, within PP_0158at 169.220 kb on + strand, within PP_0158at 169.220 kb on + strand, within PP_0158at 169.220 kb on + strand, within PP_0158at 169.221 kb on - strand, within PP_0158at 169.273 kb on - strand, within PP_0158at 169.273 kb on - strand, within PP_0158at 169.426 kb on + strand, within PP_0158at 169.426 kb on + strand, within PP_0158at 169.426 kb on + strand, within PP_0158at 169.514 kb on + strandat 169.514 kb on + strandat 169.514 kb on + strandat 169.514 kb on + strandat 169.514 kb on + strandat 169.514 kb on + strandat 169.514 kb on + strandat 169.515 kb on - strandat 169.515 kb on - strandat 169.515 kb on - strandat 169.515 kb on - strandat 169.523 kb on - strandat 169.523 kb on - strandat 169.543 kb on + strandat 169.580 kb on + strandat 169.580 kb on + strandat 169.580 kb on + strandat 169.580 kb on + strandat 169.581 kb on - strandat 169.581 kb on - strandat 169.583 kb on + strandat 169.584 kb on - strandat 169.584 kb on - strandat 169.584 kb on - strandat 169.627 kb on + strandat 169.627 kb on + strandat 169.791 kb on + strand, within PP_0159at 169.791 kb on + strand, within PP_0159at 169.791 kb on + strand, within PP_0159at 169.791 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.794 kb on + strand, within PP_0159at 169.795 kb on - strand, within PP_0159at 169.795 kb on - strand, within PP_0159at 169.795 kb on - strand, within PP_0159at 169.795 kb on - strand, within PP_0159at 169.897 kb on + strand, within PP_0159at 169.898 kb on - strand, within PP_0159at 169.898 kb on - strand, within PP_0159at 169.929 kb on + strand, within PP_0159at 169.941 kb on + strand, within PP_0159at 169.942 kb on - strand, within PP_0159at 169.977 kb on + strand, within PP_0159at 169.977 kb on + strand, within PP_0159at 169.977 kb on + strandat 169.977 kb on + strandat 169.977 kb on + strand, within PP_0159at 169.977 kb on + strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 169.978 kb on - strand, within PP_0159at 170.032 kb on - strand, within PP_0159at 170.129 kb on + strand, within PP_0159at 170.151 kb on + strand, within PP_0159at 170.151 kb on + strand, within PP_0159at 170.152 kb on - strand, within PP_0159at 170.271 kb on + strand, within PP_0159at 170.272 kb on - strand, within PP_0159at 170.272 kb on - strand, within PP_0159at 170.318 kb on + strand, within PP_0159at 170.318 kb on + strand, within PP_0159at 170.318 kb on + strandat 170.318 kb on + strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.319 kb on - strand, within PP_0159at 170.321 kb on + strand, within PP_0159at 170.321 kb on + strand, within PP_0159at 170.321 kb on + strand, within PP_0159at 170.321 kb on + strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.322 kb on - strand, within PP_0159at 170.323 kb on + strand, within PP_0159at 170.323 kb on + strand, within PP_0159at 170.323 kb on + strand, within PP_0159at 170.323 kb on - strand, within PP_0159at 170.324 kb on - strand, within PP_0159at 170.324 kb on - strand, within PP_0159at 170.324 kb on - strand, within PP_0159at 170.324 kb on - strand, within PP_0159at 170.332 kb on - strand, within PP_0159at 170.378 kb on + strand, within PP_0159at 170.450 kb on + strand, within PP_0159at 170.488 kb on + strand, within PP_0159at 170.574 kb on - strand, within PP_0159

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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167,441 + PP_0157 0.13 -0.7
167,441 + PP_0157 0.13 +0.3
167,442 - PP_0157 0.13 -0.2
167,442 - PP_0157 0.13 -0.4
167,442 - PP_0157 0.13 +1.2
167,445 - PP_0157 0.13 +0.4
167,445 - PP_0157 0.13 +0.6
167,445 - PP_0157 0.13 +1.5
167,458 - PP_0157 0.14 -0.2
167,476 - PP_0157 0.16 -1.0
167,527 + PP_0157 0.22 -1.2
167,528 - PP_0157 0.22 +0.3
167,578 + PP_0157 0.27 +0.2
167,578 + PP_0157 0.27 -1.6
167,578 + PP_0157 0.27 -0.4
167,579 - PP_0157 0.28 +2.5
167,579 - PP_0157 0.28 -0.8
167,585 + PP_0157 0.28 +1.0
167,586 - PP_0157 0.28 +0.9
167,807 + PP_0157 0.52 -0.3
167,808 - PP_0157 0.53 -0.9
167,808 - PP_0157 0.53 +0.3
167,827 - PP_0157 0.55 +1.0
167,827 - PP_0157 0.55 +0.6
167,914 + PP_0157 0.64 -0.3
167,915 - PP_0157 0.64 -1.1
167,994 + PP_0157 0.73 -0.8
167,994 + PP_0157 0.73 +0.1
167,995 - PP_0157 0.73 -0.7
168,039 - PP_0157 0.78 +0.5
168,099 + PP_0157 0.84 -0.4
168,174 + +0.1
168,245 + -1.5
168,262 + -1.1
168,263 - +0.4
168,263 - -0.3
168,263 - -0.2
168,263 - +0.1
168,274 + -1.4
168,275 - -0.2
168,275 - +0.6
168,358 - -0.5
168,386 + +0.5
168,386 + +0.6
168,621 - PP_0158 0.18 -0.2
168,641 + PP_0158 0.20 -2.0
168,641 + PP_0158 0.20 -1.3
168,641 + PP_0158 0.20 +0.6
168,641 + PP_0158 0.20 -0.9
168,641 + PP_0158 0.20 -2.4
168,641 + PP_0158 0.20 +0.1
168,642 - PP_0158 0.20 -0.3
168,642 - PP_0158 0.20 -0.2
168,642 - PP_0158 0.20 -0.4
168,642 - PP_0158 0.20 +1.1
168,642 - PP_0158 0.20 -1.3
168,650 + PP_0158 0.21 -1.3
168,650 + PP_0158 0.21 -1.9
168,650 + PP_0158 0.21 -0.2
168,651 - PP_0158 0.21 +0.1
168,658 + PP_0158 0.21 -3.0
168,773 + PP_0158 0.31 -0.8
168,829 + PP_0158 0.36 +0.5
168,830 - PP_0158 0.36 -2.1
169,160 + PP_0158 0.64 -3.2
169,160 + PP_0158 0.64 -1.1
169,160 + PP_0158 0.64 -1.6
169,160 + PP_0158 0.64 -1.2
169,161 - PP_0158 0.64 -0.1
169,165 + PP_0158 0.64 -2.2
169,220 + PP_0158 0.69 +0.4
169,220 + PP_0158 0.69 -2.7
169,220 + PP_0158 0.69 -3.2
169,221 - PP_0158 0.69 +0.2
169,273 - PP_0158 0.74 -0.9
169,273 - PP_0158 0.74 -1.1
169,426 + PP_0158 0.86 -1.3
169,426 + PP_0158 0.86 -1.3
169,426 + PP_0158 0.86 -1.5
169,514 + -2.5
169,514 + +0.0
169,514 + -1.9
169,514 + -1.1
169,514 + -1.8
169,514 + +0.0
169,514 + -2.1
169,515 - +0.1
169,515 - -0.4
169,515 - +0.7
169,515 - +0.5
169,523 - +0.5
169,523 - +0.5
169,543 + -0.2
169,580 + +1.2
169,580 + -0.3
169,580 + -1.0
169,580 + +0.9
169,581 - -0.1
169,581 - +0.3
169,583 + +0.1
169,584 - -0.9
169,584 - +0.6
169,584 - -0.1
169,627 + +0.4
169,627 + -1.2
169,791 + PP_0159 0.16 -0.6
169,791 + PP_0159 0.16 +0.9
169,791 + PP_0159 0.16 -0.3
169,791 + PP_0159 0.16 -1.0
169,794 + PP_0159 0.16 +0.3
169,794 + PP_0159 0.16 +0.8
169,794 + PP_0159 0.16 -0.4
169,794 + PP_0159 0.16 -0.3
169,794 + PP_0159 0.16 +1.7
169,794 + PP_0159 0.16 -1.5
169,795 - PP_0159 0.16 -1.4
169,795 - PP_0159 0.16 +1.5
169,795 - PP_0159 0.16 -0.5
169,795 - PP_0159 0.16 -1.1
169,897 + PP_0159 0.24 +1.7
169,898 - PP_0159 0.24 -0.5
169,898 - PP_0159 0.24 -0.2
169,929 + PP_0159 0.27 -1.3
169,941 + PP_0159 0.28 -1.3
169,942 - PP_0159 0.28 +0.1
169,977 + PP_0159 0.31 -0.7
169,977 + PP_0159 0.31 -2.2
169,977 + +0.1
169,977 + +0.5
169,977 + PP_0159 0.31 +0.1
169,977 + PP_0159 0.31 -0.2
169,978 - PP_0159 0.31 -0.4
169,978 - PP_0159 0.31 -1.0
169,978 - PP_0159 0.31 -1.0
169,978 - PP_0159 0.31 -0.9
169,978 - PP_0159 0.31 -1.0
169,978 - PP_0159 0.31 +0.7
169,978 - PP_0159 0.31 -0.3
169,978 - PP_0159 0.31 +0.8
170,032 - PP_0159 0.35 +0.5
170,129 + PP_0159 0.43 -0.1
170,151 + PP_0159 0.45 -2.0
170,151 + PP_0159 0.45 -1.0
170,152 - PP_0159 0.45 -0.4
170,271 + PP_0159 0.55 -0.6
170,272 - PP_0159 0.55 -0.5
170,272 - PP_0159 0.55 -1.3
170,318 + PP_0159 0.59 -0.7
170,318 + PP_0159 0.59 -0.5
170,318 + -0.5
170,318 + PP_0159 0.59 -0.9
170,319 - PP_0159 0.59 -0.5
170,319 - PP_0159 0.59 -1.1
170,319 - PP_0159 0.59 -0.2
170,319 - PP_0159 0.59 +1.1
170,319 - PP_0159 0.59 +0.4
170,319 - PP_0159 0.59 -1.7
170,319 - PP_0159 0.59 -0.8
170,321 + PP_0159 0.59 -0.8
170,321 + PP_0159 0.59 -0.6
170,321 + PP_0159 0.59 -3.3
170,321 + PP_0159 0.59 -1.0
170,322 - PP_0159 0.59 -1.9
170,322 - PP_0159 0.59 -1.2
170,322 - PP_0159 0.59 -0.0
170,322 - PP_0159 0.59 -0.5
170,322 - PP_0159 0.59 -2.3
170,322 - PP_0159 0.59 +0.8
170,323 + PP_0159 0.59 +0.2
170,323 + PP_0159 0.59 +0.1
170,323 + PP_0159 0.59 -0.4
170,323 - PP_0159 0.59 -0.4
170,324 - PP_0159 0.59 -0.8
170,324 - PP_0159 0.59 +0.5
170,324 - PP_0159 0.59 +0.3
170,324 - PP_0159 0.59 -0.9
170,332 - PP_0159 0.60 +0.7
170,378 + PP_0159 0.64 -0.1
170,450 + PP_0159 0.70 -1.2
170,488 + PP_0159 0.73 -1.5
170,574 - PP_0159 0.80 +0.2

Or see this region's nucleotide sequence