Strain Fitness in Pseudomonas putida KT2440 around PP_0129

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0127 and PP_0128 are separated by 12 nucleotidesPP_0128 and PP_0129 are separated by 27 nucleotidesPP_0129 and PP_0130 are separated by 73 nucleotides PP_0127: PP_0127 - Thiol:disulfide interchange protein, at 132,578 to 133,210 _0127 PP_0128: PP_0128 - conserved protein of unknown function, at 133,223 to 134,077 _0128 PP_0129: PP_0129 - GGDEF domain protein, at 134,105 to 136,042 _0129 PP_0130: PP_0130 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, at 136,116 to 136,904 _0130 Position (kb) 134 135 136 137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 133.122 kb on - strand, within PP_0127at 133.208 kb on + strandat 133.208 kb on + strandat 133.208 kb on + strandat 133.240 kb on + strandat 133.240 kb on + strandat 133.240 kb on + strandat 133.240 kb on + strandat 133.240 kb on + strandat 133.241 kb on - strandat 133.387 kb on + strand, within PP_0128at 133.387 kb on + strand, within PP_0128at 133.388 kb on - strand, within PP_0128at 133.511 kb on + strand, within PP_0128at 133.512 kb on - strand, within PP_0128at 133.562 kb on + strand, within PP_0128at 133.562 kb on + strand, within PP_0128at 133.563 kb on - strand, within PP_0128at 133.720 kb on - strand, within PP_0128at 133.775 kb on + strand, within PP_0128at 133.775 kb on + strand, within PP_0128at 133.775 kb on + strand, within PP_0128at 133.776 kb on - strand, within PP_0128at 133.777 kb on + strand, within PP_0128at 133.778 kb on - strand, within PP_0128at 133.800 kb on - strand, within PP_0128at 133.942 kb on + strand, within PP_0128at 133.942 kb on + strand, within PP_0128at 133.943 kb on - strand, within PP_0128at 133.943 kb on - strand, within PP_0128at 133.943 kb on - strand, within PP_0128at 133.943 kb on - strand, within PP_0128at 134.056 kb on + strandat 134.056 kb on + strandat 134.056 kb on + strandat 134.075 kb on + strandat 134.076 kb on - strandat 134.076 kb on - strandat 134.139 kb on - strandat 134.143 kb on + strandat 134.143 kb on + strandat 134.449 kb on + strand, within PP_0129at 134.688 kb on + strand, within PP_0129at 134.688 kb on + strand, within PP_0129at 134.689 kb on - strand, within PP_0129at 134.689 kb on - strand, within PP_0129at 134.742 kb on + strand, within PP_0129at 134.743 kb on - strand, within PP_0129at 134.932 kb on - strand, within PP_0129at 134.932 kb on - strand, within PP_0129at 134.969 kb on + strand, within PP_0129at 134.969 kb on + strand, within PP_0129at 134.969 kb on + strand, within PP_0129at 134.970 kb on - strandat 134.970 kb on - strand, within PP_0129at 134.970 kb on - strand, within PP_0129at 134.981 kb on + strand, within PP_0129at 134.981 kb on + strand, within PP_0129at 134.982 kb on - strand, within PP_0129at 134.999 kb on + strand, within PP_0129at 135.000 kb on - strand, within PP_0129at 135.000 kb on - strand, within PP_0129at 135.000 kb on - strand, within PP_0129at 135.125 kb on + strand, within PP_0129at 135.126 kb on - strand, within PP_0129at 135.126 kb on - strand, within PP_0129at 135.160 kb on - strand, within PP_0129at 135.160 kb on - strand, within PP_0129at 135.207 kb on - strand, within PP_0129at 135.207 kb on - strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.283 kb on + strand, within PP_0129at 135.284 kb on - strand, within PP_0129at 135.284 kb on - strand, within PP_0129at 135.284 kb on - strand, within PP_0129at 135.284 kb on - strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.704 kb on + strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.705 kb on - strand, within PP_0129at 135.830 kb on - strand, within PP_0129at 136.021 kb on + strandat 136.022 kb on - strandat 136.082 kb on + strandat 136.082 kb on + strandat 136.082 kb on + strandat 136.082 kb on + strandat 136.083 kb on - strandat 136.083 kb on - strandat 136.085 kb on - strandat 136.098 kb on + strandat 136.156 kb on + strandat 136.156 kb on + strandat 136.157 kb on - strandat 136.157 kb on - strandat 136.251 kb on + strand, within PP_0130at 136.251 kb on + strand, within PP_0130at 136.251 kb on + strand, within PP_0130at 136.251 kb on + strand, within PP_0130at 136.252 kb on - strand, within PP_0130at 136.252 kb on - strand, within PP_0130at 136.252 kb on - strand, within PP_0130at 136.252 kb on - strand, within PP_0130at 136.252 kb on - strand, within PP_0130at 136.290 kb on - strand, within PP_0130at 136.314 kb on + strand, within PP_0130at 136.314 kb on + strand, within PP_0130at 136.315 kb on - strand, within PP_0130at 136.315 kb on - strand, within PP_0130at 136.337 kb on + strand, within PP_0130at 136.344 kb on + strand, within PP_0130at 136.344 kb on + strand, within PP_0130at 136.344 kb on + strand, within PP_0130at 136.344 kb on + strand, within PP_0130at 136.345 kb on - strand, within PP_0130at 136.345 kb on - strand, within PP_0130at 136.345 kb on - strand, within PP_0130at 136.354 kb on + strand, within PP_0130at 136.354 kb on + strand, within PP_0130at 136.354 kb on + strand, within PP_0130at 136.355 kb on - strand, within PP_0130at 136.355 kb on - strand, within PP_0130at 136.355 kb on - strandat 136.491 kb on + strand, within PP_0130at 136.491 kb on + strand, within PP_0130at 136.491 kb on + strand, within PP_0130at 136.568 kb on + strand, within PP_0130at 136.659 kb on - strand, within PP_0130at 136.698 kb on + strand, within PP_0130at 136.698 kb on + strand, within PP_0130at 136.699 kb on - strand, within PP_0130at 136.699 kb on - strand, within PP_0130at 136.732 kb on - strand, within PP_0130at 136.850 kb on + strandat 136.851 kb on - strandat 136.885 kb on + strandat 136.885 kb on + strandat 136.886 kb on - strandat 136.974 kb on + strandat 136.983 kb on - strandat 136.983 kb on - strandat 137.014 kb on + strandat 137.014 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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133,122 - PP_0127 0.86 -2.7
133,208 + +0.7
133,208 + -1.4
133,208 + -0.5
133,240 + -0.4
133,240 + -0.7
133,240 + -1.5
133,240 + -1.5
133,240 + +1.2
133,241 - -0.5
133,387 + PP_0128 0.19 -0.6
133,387 + PP_0128 0.19 -1.6
133,388 - PP_0128 0.19 -1.5
133,511 + PP_0128 0.34 +0.6
133,512 - PP_0128 0.34 -1.4
133,562 + PP_0128 0.40 -2.5
133,562 + PP_0128 0.40 -0.4
133,563 - PP_0128 0.40 +1.1
133,720 - PP_0128 0.58 -0.6
133,775 + PP_0128 0.65 +0.9
133,775 + PP_0128 0.65 +0.3
133,775 + PP_0128 0.65 -1.5
133,776 - PP_0128 0.65 +1.2
133,777 + PP_0128 0.65 +0.6
133,778 - PP_0128 0.65 +0.9
133,800 - PP_0128 0.67 +0.8
133,942 + PP_0128 0.84 +1.3
133,942 + PP_0128 0.84 -0.7
133,943 - PP_0128 0.84 +0.6
133,943 - PP_0128 0.84 +0.6
133,943 - PP_0128 0.84 +0.5
133,943 - PP_0128 0.84 +0.7
134,056 + +0.3
134,056 + -3.6
134,056 + +0.9
134,075 + +0.4
134,076 - -1.6
134,076 - -1.6
134,139 - -0.2
134,143 + +1.0
134,143 + -1.8
134,449 + PP_0129 0.18 -0.4
134,688 + PP_0129 0.30 +0.7
134,688 + PP_0129 0.30 +0.0
134,689 - PP_0129 0.30 +0.1
134,689 - PP_0129 0.30 -2.5
134,742 + PP_0129 0.33 -1.0
134,743 - PP_0129 0.33 -2.2
134,932 - PP_0129 0.43 -0.8
134,932 - PP_0129 0.43 -3.5
134,969 + PP_0129 0.45 -0.9
134,969 + PP_0129 0.45 -1.9
134,969 + PP_0129 0.45 -1.9
134,970 - +1.1
134,970 - PP_0129 0.45 -0.7
134,970 - PP_0129 0.45 +0.8
134,981 + PP_0129 0.45 -0.2
134,981 + PP_0129 0.45 -0.6
134,982 - PP_0129 0.45 -2.1
134,999 + PP_0129 0.46 -0.1
135,000 - PP_0129 0.46 -3.3
135,000 - PP_0129 0.46 -2.9
135,000 - PP_0129 0.46 -0.2
135,125 + PP_0129 0.53 -2.4
135,126 - PP_0129 0.53 -2.3
135,126 - PP_0129 0.53 -0.3
135,160 - PP_0129 0.54 -3.6
135,160 - PP_0129 0.54 -0.5
135,207 - PP_0129 0.57 -0.5
135,207 - PP_0129 0.57 +0.7
135,283 + PP_0129 0.61 -0.5
135,283 + PP_0129 0.61 -2.6
135,283 + PP_0129 0.61 +0.3
135,283 + PP_0129 0.61 -2.4
135,283 + PP_0129 0.61 -0.6
135,283 + PP_0129 0.61 -1.4
135,283 + PP_0129 0.61 -0.5
135,284 - PP_0129 0.61 -0.1
135,284 - PP_0129 0.61 -3.2
135,284 - PP_0129 0.61 -0.6
135,284 - PP_0129 0.61 -1.1
135,704 + PP_0129 0.83 -0.8
135,704 + PP_0129 0.83 -0.6
135,704 + PP_0129 0.83 +0.8
135,704 + PP_0129 0.83 -2.5
135,704 + PP_0129 0.83 +0.1
135,704 + PP_0129 0.83 -0.5
135,704 + PP_0129 0.83 -0.2
135,704 + PP_0129 0.83 -1.0
135,704 + PP_0129 0.83 +0.1
135,704 + PP_0129 0.83 +0.4
135,704 + PP_0129 0.83 -2.5
135,705 - PP_0129 0.83 -2.5
135,705 - PP_0129 0.83 -0.5
135,705 - PP_0129 0.83 -1.7
135,705 - PP_0129 0.83 -2.0
135,705 - PP_0129 0.83 -2.7
135,705 - PP_0129 0.83 -1.0
135,705 - PP_0129 0.83 +0.1
135,705 - PP_0129 0.83 -1.3
135,705 - PP_0129 0.83 -1.5
135,705 - PP_0129 0.83 -2.0
135,705 - PP_0129 0.83 -1.0
135,830 - PP_0129 0.89 -0.2
136,021 + -2.2
136,022 - +0.1
136,082 + -1.1
136,082 + -1.0
136,082 + -0.7
136,082 + +1.2
136,083 - -0.3
136,083 - +0.9
136,085 - +0.8
136,098 + +0.2
136,156 + +1.5
136,156 + +0.3
136,157 - +0.1
136,157 - +1.1
136,251 + PP_0130 0.17 +0.1
136,251 + PP_0130 0.17 +1.3
136,251 + PP_0130 0.17 +1.0
136,251 + PP_0130 0.17 +0.7
136,252 - PP_0130 0.17 -2.0
136,252 - PP_0130 0.17 +0.3
136,252 - PP_0130 0.17 +1.2
136,252 - PP_0130 0.17 +0.9
136,252 - PP_0130 0.17 +0.6
136,290 - PP_0130 0.22 -1.1
136,314 + PP_0130 0.25 -1.7
136,314 + PP_0130 0.25 +1.2
136,315 - PP_0130 0.25 +1.2
136,315 - PP_0130 0.25 +0.7
136,337 + PP_0130 0.28 -2.3
136,344 + PP_0130 0.29 +2.1
136,344 + PP_0130 0.29 +1.5
136,344 + PP_0130 0.29 -0.7
136,344 + PP_0130 0.29 -0.0
136,345 - PP_0130 0.29 -1.2
136,345 - PP_0130 0.29 -3.2
136,345 - PP_0130 0.29 +1.0
136,354 + PP_0130 0.30 +0.6
136,354 + PP_0130 0.30 +1.6
136,354 + PP_0130 0.30 +1.3
136,355 - PP_0130 0.30 +1.2
136,355 - PP_0130 0.30 +0.3
136,355 - -0.5
136,491 + PP_0130 0.48 +0.5
136,491 + PP_0130 0.48 +0.2
136,491 + PP_0130 0.48 -0.7
136,568 + PP_0130 0.57 -0.0
136,659 - PP_0130 0.69 +1.4
136,698 + PP_0130 0.74 +1.0
136,698 + PP_0130 0.74 +0.1
136,699 - PP_0130 0.74 -2.3
136,699 - PP_0130 0.74 -1.3
136,732 - PP_0130 0.78 -0.5
136,850 + -1.2
136,851 - -0.3
136,885 + +2.4
136,885 + -1.8
136,886 - +1.1
136,974 + -0.7
136,983 - -0.4
136,983 - -1.1
137,014 + +0.0
137,014 + -0.7

Or see this region's nucleotide sequence